Analysis of interatomic Contacts of Structural Units in PDB entry:
3A79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3A79 entry

There are 3 chains in PDB entry 3A79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 26PRO 575
B
 GLU 33PRO 557
C
 CYS 11LYS 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3A79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
209 211Right-handed 310
Helix 2
2
A
212 220Right-handed alpha
Helix 3
3
A
263 270Right-handed alpha
Helix 4
4
A
271 275Right-handed 310
Helix 5
5
A
298 305Right-handed alpha
Helix 6
6
A
321 325Right-handed 310
Helix 7
7
A
328 332Right-handed 310
Helix 8
8
A
352 359Right-handed alpha
Helix 9
9
A
373 381Right-handed alpha
Helix 10
10
A
401 409Right-handed alpha
Helix 11
11
A
410 412Right-handed 310
Helix 12
12
A
542 552Right-handed alpha
Helix 13
13
B
68 72Right-handed 310
Helix 14
14
B
139 145Right-handed 310
Helix 15
15
B
163 167Right-handed 310
Helix 16
16
B
234 247Right-handed alpha
Helix 17
17
B
262 274Right-handed alpha
Helix 18
18
B
320 330Right-handed alpha
Helix 19
19
B
393 398Right-handed alpha
Helix 20
20
B
441 446Right-handed 310
Helix 21
21
B
512 526Right-handed alpha
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There are 9 sheets in PDB entry 3A79. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 19 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
56 58parallel
Strand 3
A
80 82parallel
Strand 4
A
104 106parallel
Strand 5
A
128 130parallel
Strand 6
A
153 158parallel
Strand 7
A
175 183parallel
Strand 8
A
199 206parallel
Strand 9
A
226 230parallel
Strand 10
A
253 256parallel
Strand 11
A
281 284parallel
Strand 12
A
311 315parallel
Strand 13
A
340 344parallel
Strand 14
A
364 366parallel
Strand 15
A
391 393parallel
Strand 16
A
417 419parallel
Strand 17
A
440 442parallel
Strand 18
A
461 463parallel
Strand 19
A
481 483parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
90 91parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
188 189parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
288 290parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 505first strand
Strand 2
A
527 529parallel
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There are 19 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
56 58parallel
Strand 3
B
80 82parallel
Strand 4
B
104 106parallel
Strand 5
B
125 127parallel
Strand 6
B
150 154parallel
Strand 7
B
171 178parallel
Strand 8
B
196 203parallel
Strand 9
B
220 229parallel
Strand 10
B
252 261parallel
Strand 11
B
278 288parallel
Strand 12
B
306 314parallel
Strand 13
B
335 339parallel
Strand 14
B
357 359parallel
Strand 15
B
381 383parallel
Strand 16
B
407 409parallel
Strand 17
B
432 434parallel
Strand 18
B
454 456parallel
Strand 19
B
477 479parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 91first strand
Strand 2
B
114 115parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 193first strand
Strand 2
B
214 217parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
502 503first strand
Strand 2
B
530 531parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il