Analysis of interatomic Contacts of Structural Units in PDB entry:
3AAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AAG entry

There are 44 chains in PDB entry 3AAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 436LEU 444
A
 ASN 446VAL 470
A
 THR 472GLY 477
A
 HIS 479GLY 481
A
 ASP 483SER 492
A
 ASP 494GLU 510
A
 SER 512LEU 521
A
 SER 523MSE 530
A
 ASP 532SER 546
A
 PRO 548PHE 550
A
 ILE 552PRO 555
A
 THR 557ASN 582
A
 PRO 591VAL 602
A
 ASN 604PHE 622
A
 ILE 624ILE 640
A
 GLN 642TYR 645
A
 ILE 647ASP 652
A
 ALA 654LEU 661
A
 ASP 663ASP 675
A
 THR 677ASP 693
A
 ASN 695ALA 706
A
 VAL 708PHE 709
A
 LEU 711LEU 711
A
 ILE 713ILE 713
B
 ASN 436LEU 444
B
 ASN 446VAL 470
B
 THR 472GLY 477
B
 HIS 479GLY 481
B
 ASP 483SER 492
B
 ASP 494GLU 510
B
 SER 512SER 546
B
 PRO 548PHE 550
B
 ILE 552PRO 555
B
 THR 557VAL 602
B
 ASN 604PHE 622
B
 ILE 624ILE 640
B
 GLN 642TYR 645
B
 ILE 647ASP 652
B
 ALA 654LEU 661
B
 ASP 663ASP 675
B
 THR 677ALA 706
B
 VAL 708PHE 709
B
 LEU 711LEU 711
B
 ILE 713ILE 713
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3AAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
436 448Right-handed alpha
Helix 2
2
A
457 459Right-handed 310
Helix 3
3
A
460 469Right-handed alpha
Helix 4
4
A
480 493Right-handed alpha
Helix 5
5
A
494 512Right-handed alpha
Helix 6
6
A
524 532Right-handed alpha
Helix 7
7
A
537 545Right-handed alpha
Helix 8
8
A
567 570Right-handed 310
Helix 9
9
A
571 578Right-handed alpha
Helix 10
10
A
675 681Right-handed alpha
Helix 11
11
A
681 687Right-handed alpha
Helix 12
12
B
436 448Right-handed alpha
Helix 13
13
B
457 459Right-handed 310
Helix 14
14
B
460 465Right-handed alpha
Helix 15
15
B
480 493Right-handed alpha
Helix 16
16
B
494 511Right-handed alpha
Helix 17
17
B
565 570Right-handed 310
Helix 18
18
B
571 577Right-handed alpha
Helix 19
19
B
676 681Right-handed alpha
Helix 20
20
B
681 688Right-handed alpha
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There are 6 sheets in PDB entry 3AAG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 472first strand
Strand 2
A
453 455parallel
Strand 3
A
560 565parallel
Strand 4
A
706 711anti-parallel
Strand 5
A
697 702anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 597first strand
Strand 2
A
671 674anti-parallel
Strand 3
A
657 660anti-parallel
Strand 4
A
633 639parallel
Strand 5
A
644 649anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
599 601first strand
Strand 2
A
606 609anti-parallel
Strand 3
A
614 616anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
453 455first strand
Strand 2
B
560 562parallel
Strand 3
B
707 711anti-parallel
Strand 4
B
697 702anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
594 597first strand
Strand 2
B
671 675anti-parallel
Strand 3
B
656 660anti-parallel
Strand 4
B
633 639parallel
Strand 5
B
644 649anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
599 602first strand
Strand 2
B
606 609anti-parallel
Strand 3
B
614 616anti-parallel
Strand 4
B
621 623anti-parallel
Strand 5
B
629 630anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il