Analysis of interatomic Contacts of Structural Units in PDB entry:
3AAL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AAL entry

There is 1 chain in PDB entry 3AAL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 2GLU 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3AAL. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
15 26Right-handed alpha
Helix 2
2
A
46 49Right-handed 310
Helix 3
3
A
50 61Right-handed alpha
Helix 4
4
A
81 103Right-handed alpha
Helix 5
5
A
118 134Right-handed alpha
Helix 6
6
A
157 168Right-handed alpha
Helix 7
7
A
170 172Right-handed 310
Helix 8
8
A
180 187Right-handed alpha
Helix 9
9
A
189 205Right-handed alpha
Helix 10
10
A
206 208Right-handed 310
Helix 11
11
A
238 247Right-handed alpha
Helix 12
12
A
273 284Right-handed alpha
Helix 13
13
A
289 295Right-handed alpha
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There are 3 sheets in PDB entry 3AAL. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 7first strand
Strand 2
A
30 34parallel
Strand 3
A
65 69parallel
Strand 4
A
106 109parallel
Strand 5
A
141 145parallel
Strand 6
A
174 179parallel
Strand 7
A
210 215parallel
Strand 8
A
256 258parallel
Strand 9
A
4 7parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
112 113first strand
Strand 2
A
153 154anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
217 218first strand
Strand 2
A
229 230anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il