Analysis of interatomic Contacts of Structural Units in PDB entry:
3ABB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ABB entry

There is 1 chain in PDB entry 3ABB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11HIS 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3ABB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 34Right-handed alpha
Helix 2
2
A
55 64Right-handed alpha
Helix 3
3
A
100 110Right-handed alpha
Helix 4
4
A
111 113Right-handed 310
Helix 5
5
A
114 139Right-handed alpha
Helix 6
6
A
145 149Right-handed alpha
Helix 7
7
A
151 163Right-handed alpha
Helix 8
8
A
165 167Right-handed 310
Helix 9
9
A
168 180Right-handed alpha
Helix 10
10
A
190 209Right-handed alpha
Helix 11
11
A
213 224Right-handed alpha
Helix 12
12
A
229 261Right-handed alpha
Helix 13
13
A
262 271Right-handed 310
Helix 14
14
A
272 288Right-handed alpha
Helix 15
15
A
318 323Right-handed alpha
Helix 16
16
A
348 352Right-handed 310
Helix 17
17
A
355 374Right-handed alpha
Helix 18
18
A
382 386Right-handed 310
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There are 3 sheets in PDB entry 3ABB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
313 317parallel
Strand 4
A
292 297anti-parallel
Strand 5
A
68 69anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
401 403anti-parallel
Strand 3
A
378 379anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
306 308anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il