Analysis of interatomic Contacts of Structural Units in PDB entry:
3AD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AD8 entry

There are 4 chains in PDB entry 3AD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ASP 963
B
 ALA 1HIS 404
C
 GLN 6ALA 200
D
 MET 1LEU 91
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 55 helices in PDB entry 3AD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 12Right-handed 310
Helix 2
2
A
38 46Right-handed alpha
Helix 3
3
A
136 149Right-handed alpha
Helix 4
4
A
163 169Right-handed 310
Helix 5
5
A
179 193Right-handed alpha
Helix 6
6
A
268 279Right-handed alpha
Helix 7
7
A
292 294Right-handed 310
Helix 8
8
A
295 303Right-handed alpha
Helix 9
9
A
304 306Right-handed 310
Helix 10
10
A
319 328Right-handed alpha
Helix 11
11
A
384 390Right-handed alpha
Helix 12
12
A
416 420Right-handed 310
Helix 13
13
A
423 442Right-handed alpha
Helix 14
14
A
474 479Right-handed 310
Helix 15
15
A
491 500Right-handed alpha
Helix 16
16
A
504 513Right-handed alpha
Helix 17
17
A
524 537Right-handed alpha
Helix 18
18
A
540 545Right-handed alpha
Helix 19
19
A
558 563Right-handed alpha
Helix 20
20
A
566 571Right-handed 310
Helix 21
21
A
578 585Right-handed alpha
Helix 22
22
A
607 622Right-handed alpha
Helix 23
23
A
640 649Right-handed alpha
Helix 24
24
A
695 710Right-handed alpha
Helix 25
25
A
734 743Right-handed alpha
Helix 26
26
A
790 803Right-handed alpha
Helix 27
27
A
804 806Right-handed 310
Helix 28
28
A
811 822Right-handed alpha
Helix 29
29
A
842 846Right-handed 310
Helix 30
30
A
854 865Right-handed 310
Helix 31
31
A
927 931Right-handed 310
Helix 32
32
B
29 44Right-handed alpha
Helix 33
33
B
59 63Right-handed 310
Helix 34
34
B
74 96Right-handed alpha
Helix 35
35
B
112 129Right-handed alpha
Helix 36
36
B
137 145Right-handed alpha
Helix 37
37
B
171 186Right-handed alpha
Helix 38
38
B
225 227Right-handed 310
Helix 39
39
B
228 237Right-handed alpha
Helix 40
40
B
298 312Right-handed alpha
Helix 41
41
B
313 317Right-handed 310
Helix 42
42
B
359 374Right-handed alpha
Helix 43
43
B
380 385Right-handed 310
Helix 44
44
B
386 391Right-handed alpha
Helix 45
45
B
396 401Right-handed alpha
Helix 46
46
C
12 14Right-handed 310
Helix 47
47
C
15 22Right-handed alpha
Helix 48
48
C
49 59Right-handed alpha
Helix 49
49
C
95 106Right-handed alpha
Helix 50
50
C
128 134Right-handed alpha
Helix 51
51
C
176 178Right-handed 310
Helix 52
52
C
179 196Right-handed alpha
Helix 53
53
D
15 17Right-handed 310
Helix 54
54
D
30 34Right-handed 310
Helix 55
55
D
35 45Right-handed alpha
Back to top of page

There are 22 sheets in PDB entry 3AD8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
280 281anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 35first strand
Strand 2
A
17 26anti-parallel
Strand 3
A
101 105parallel
Strand 4
A
74 77anti-parallel
Strand 5
A
87 91anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 199first strand
Strand 2
A
153 156parallel
Strand 3
A
121 133parallel
Strand 4
A
234 246parallel
Strand 5
A
212 218anti-parallel
Strand 6
A
202 208anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 199first strand
Strand 2
A
153 156parallel
Strand 3
A
121 133parallel
Strand 4
A
234 246parallel
Strand 5
A
412 414parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
177 178anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 252first strand
Strand 2
A
380 382anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
373 377parallel
Strand 3
A
286 290parallel
Strand 4
A
311 313parallel
Strand 5
A
332 333parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 343first strand
Strand 2
A
349 356anti-parallel
Strand 3
A
367 370anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 397first strand
Strand 2
A
402 405anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
489 490anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 557first strand
Strand 2
B
319 330anti-parallel
Strand 3
B
243 254anti-parallel
Strand 4
B
279 286anti-parallel
Strand 5
B
270 274anti-parallel
Strand 6
B
262 265anti-parallel
Strand 7
B
106 110parallel
Strand 8
B
160 164anti-parallel
Strand 9
B
134 136anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 592first strand
Strand 2
A
595 600anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
758 762first strand
Strand 2
A
768 772anti-parallel
Strand 3
A
781 787anti-parallel
Strand 4
A
725 731anti-parallel
Strand 5
A
624 627anti-parallel
Strand 6
A
808 809parallel
Back to list of sheets
Back to top of page

There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
661 667first strand
Strand 2
A
673 683anti-parallel
Strand 3
A
686 691anti-parallel
Strand 4
A
632 637anti-parallel
Strand 5
A
717 720anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
870 876first strand
Strand 2
A
918 925anti-parallel
Strand 3
A
905 913anti-parallel
Strand 4
A
888 891anti-parallel
Strand 5
A
935 940anti-parallel
Strand 6
A
943 950anti-parallel
Strand 7
A
870 876anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 191first strand
Strand 2
B
48 51parallel
Strand 3
B
20 26parallel
Strand 4
B
216 223parallel
Strand 5
B
206 211anti-parallel
Strand 6
B
196 201anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 191first strand
Strand 2
B
48 51parallel
Strand 3
B
20 26parallel
Strand 4
B
216 223parallel
Strand 5
B
346 350parallel
Strand 6
B
337 340anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
168 169anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 34first strand
Strand 2
C
122 125anti-parallel
Strand 3
C
170 174anti-parallel
Strand 4
C
159 167anti-parallel
Strand 5
C
150 156anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 72first strand
Strand 2
C
77 83anti-parallel
Strand 3
C
86 91anti-parallel
Strand 4
C
39 44anti-parallel
Strand 5
C
111 114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 6first strand
Strand 2
D
10 13anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 22first strand
Strand 2
D
52 58anti-parallel
Strand 3
D
66 72anti-parallel
Strand 4
D
78 83anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il