Analysis of interatomic Contacts of Structural Units in PDB entry:
3AE9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AE9 entry

There are 4 chains in PDB entry 3AE9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 10TYR 622
B
 PRO 9GLU 247
C
 THR 6MET 143
D
 SER 35LEU 136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 3AE9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 42Right-handed alpha
Helix 2
2
A
56 61Right-handed 310
Helix 3
3
A
76 88Right-handed alpha
Helix 4
4
A
93 103Right-handed alpha
Helix 5
5
A
103 115Right-handed alpha
Helix 6
6
A
153 167Right-handed alpha
Helix 7
7
A
217 221Right-handed 310
Helix 8
8
A
233 240Right-handed alpha
Helix 9
9
A
267 273Right-handed alpha
Helix 10
10
A
284 289Right-handed alpha
Helix 11
11
A
297 312Right-handed alpha
Helix 12
12
A
330 337Right-handed alpha
Helix 13
13
A
339 348Right-handed alpha
Helix 14
14
A
413 433Right-handed alpha
Helix 15
15
A
447 459Right-handed alpha
Helix 16
16
A
466 481Right-handed alpha
Helix 17
17
A
486 503Right-handed alpha
Helix 18
18
A
517 543Right-handed alpha
Helix 19
19
B
43 54Right-handed alpha
Helix 20
20
B
115 124Right-handed alpha
Helix 21
21
B
145 150Right-handed alpha
Helix 22
22
B
151 153Right-handed 310
Helix 23
23
B
164 167Right-handed 310
Helix 24
24
B
168 174Right-handed alpha
Helix 25
25
B
180 192Right-handed alpha
Helix 26
26
B
198 205Right-handed alpha
Helix 27
27
B
219 225Right-handed alpha
Helix 28
28
B
230 244Right-handed alpha
Helix 29
29
C
7 20Right-handed alpha
Helix 30
30
C
36 61Right-handed alpha
Helix 31
31
C
61 66Right-handed alpha
Helix 32
32
C
69 78Right-handed alpha
Helix 33
33
C
85 112Right-handed alpha
Helix 34
34
C
118 142Right-handed alpha
Helix 35
35
D
38 63Right-handed alpha
Helix 36
36
D
65 92Right-handed alpha
Helix 37
37
D
94 122Right-handed alpha
Helix 38
38
D
125 135Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 3AE9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
45 49parallel
Strand 3
A
15 25parallel
Strand 4
A
202 212parallel
Strand 5
A
189 196anti-parallel
Strand 6
A
177 184anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
45 49parallel
Strand 3
A
15 25parallel
Strand 4
A
202 212parallel
Strand 5
A
386 395parallel
Strand 6
A
378 383anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
147 148anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 135first strand
Strand 2
A
143 145anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
582 589anti-parallel
Strand 3
A
594 601anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 258first strand
Strand 2
A
358 367anti-parallel
Strand 3
A
322 325anti-parallel
Strand 4
A
275 277anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
400 401parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
507 508parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 485first strand
Strand 2
A
551 552parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 36first strand
Strand 2
B
11 18anti-parallel
Strand 3
B
96 100parallel
Strand 4
B
74 77anti-parallel
Strand 5
B
80 83anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 109first strand
Strand 2
B
112 113anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il