Analysis of interatomic Contacts of Structural Units in PDB entry:
3AEH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AEH entry

There are 2 chains in PDB entry 3AEH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1072GLU 1379
B
 GLY 1072GLU 1379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3AEH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1072 1098Right-handed alpha
Helix 2
2
A
1101 1107Right-handed alpha
Helix 3
3
B
1072 1098Right-handed alpha
Helix 4
4
B
1101 1107Right-handed alpha
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There are 2 sheets in PDB entry 3AEH. Click on sheet of interest to get list of strands forming it: A, B,

There are 15 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1236 1237first strand
Strand 2
A
1275 1276first strand
Strand 3
A
1217 1234first strand
Strand 4
A
1194 1211anti-parallel
Strand 5
A
1173 1190anti-parallel
Strand 6
A
1153 1170anti-parallel
Strand 7
A
1134 1150anti-parallel
Strand 8
A
1116 1128anti-parallel
Strand 9
A
1364 1377anti-parallel
Strand 10
A
1349 1359anti-parallel
Strand 11
A
1331 1345anti-parallel
Strand 12
A
1296 1310anti-parallel
Strand 13
A
1279 1292anti-parallel
Strand 14
A
1242 1257anti-parallel
Strand 15
A
1275 1276anti-parallel
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There are 15 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1236 1239first strand
Strand 2
B
1275 1276first strand
Strand 3
B
1217 1234first strand
Strand 4
B
1194 1211anti-parallel
Strand 5
B
1173 1190anti-parallel
Strand 6
B
1153 1170anti-parallel
Strand 7
B
1134 1150anti-parallel
Strand 8
B
1116 1128anti-parallel
Strand 9
B
1364 1377anti-parallel
Strand 10
B
1349 1359anti-parallel
Strand 11
B
1331 1345anti-parallel
Strand 12
B
1296 1310anti-parallel
Strand 13
B
1279 1292anti-parallel
Strand 14
B
1242 1257anti-parallel
Strand 15
B
1275 1276anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il