Analysis of interatomic Contacts of Structural Units in PDB entry:
3AFL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AFL entry

There is 1 chain in PDB entry 3AFL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 11PHE 776
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3AFL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 66Right-handed 310
Helix 2
2
A
127 135Right-handed alpha
Helix 3
3
A
145 159Right-handed alpha
Helix 4
4
A
161 163Right-handed 310
Helix 5
5
A
164 173Right-handed alpha
Helix 6
6
A
174 177Right-handed 310
Helix 7
7
A
188 192Right-handed 310
Helix 8
8
A
194 223Right-handed alpha
Helix 9
9
A
224 240Right-handed alpha
Helix 10
10
A
248 270Right-handed alpha
Helix 11
11
A
275 299Right-handed alpha
Helix 12
12
A
309 319Right-handed alpha
Helix 13
13
A
319 328Right-handed alpha
Helix 14
14
A
331 348Right-handed alpha
Helix 15
15
A
362 385Right-handed alpha
Helix 16
16
A
387 390Right-handed 310
Helix 17
17
A
391 397Right-handed alpha
Helix 18
18
A
398 405Right-handed alpha
Helix 19
19
A
425 440Right-handed alpha
Helix 20
20
A
441 455Right-handed alpha
Helix 21
21
A
461 466Right-handed alpha
Helix 22
22
A
469 481Right-handed alpha
Helix 23
23
A
488 492Right-handed 310
Helix 24
24
A
560 565Right-handed alpha
Helix 25
25
A
569 573Right-handed 310
Helix 26
26
A
588 595Right-handed alpha
Helix 27
27
A
615 621Right-handed alpha
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There are 7 sheets in PDB entry 3AFL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
78 79anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 74first strand
Strand 2
A
52 58anti-parallel
Strand 3
A
88 98anti-parallel
Strand 4
A
103 104anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 74first strand
Strand 2
A
52 58anti-parallel
Strand 3
A
88 98anti-parallel
Strand 4
A
112 116anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 498first strand
Strand 2
A
503 508anti-parallel
Strand 3
A
517 522anti-parallel
Strand 4
A
538 543anti-parallel
Strand 5
A
546 549anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
576 578first strand
Strand 2
A
640 661anti-parallel
Strand 3
A
716 738anti-parallel
Strand 4
A
679 688anti-parallel
Strand 5
A
671 675anti-parallel
Strand 6
A
666 667anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 605first strand
Strand 2
A
608 614anti-parallel
Strand 3
A
626 636anti-parallel
Strand 4
A
640 661anti-parallel
Strand 5
A
716 738anti-parallel
Strand 6
A
694 699anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
746 750first strand
Strand 2
A
755 761anti-parallel
Strand 3
A
767 773anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il