Analysis of interatomic Contacts of Structural Units in PDB entry:
3AGK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AGK entry

There is 1 chain in PDB entry 3AGK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7PHE 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 3AGK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
13 25Right-handed alpha
Helix 3
3
A
44 59Right-handed alpha
Helix 4
4
A
60 62Right-handed 310
Helix 5
5
A
64 83Right-handed alpha
Helix 6
6
A
130 135Right-handed alpha
Helix 7
7
A
187 216Right-handed alpha
Helix 8
8
A
229 237Right-handed alpha
Helix 9
9
A
241 246Right-handed alpha
Helix 10
10
A
258 270Right-handed alpha
Helix 11
11
A
273 275Right-handed 310
Helix 12
12
A
276 295Right-handed alpha
Helix 13
13
A
303 313Right-handed alpha
Helix 14
14
A
327 336Right-handed alpha
Helix 15
15
A
351 360Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3AGK. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
93 98anti-parallel
Strand 3
A
34 39anti-parallel
Strand 4
A
121 125anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 170first strand
Strand 2
A
152 159anti-parallel
Strand 3
A
142 149anti-parallel
Strand 4
A
219 226parallel
Strand 5
A
253 254parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 302first strand
Strand 2
A
362 366anti-parallel
Strand 3
A
316 322anti-parallel
Strand 4
A
341 345parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il