Analysis of interatomic Contacts of Structural Units in PDB entry:
3AGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AGQ entry

There is 1 chain in PDB entry 3AGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5ARG 1264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 3AGQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 17Right-handed alpha
Helix 2
2
A
33 44Right-handed alpha
Helix 3
3
A
45 53Right-handed alpha
Helix 4
4
A
80 85Right-handed alpha
Helix 5
5
A
86 102Right-handed alpha
Helix 6
6
A
108 115Right-handed alpha
Helix 7
7
A
115 124Right-handed alpha
Helix 8
8
A
162 175Right-handed alpha
Helix 9
9
A
197 202Right-handed alpha
Helix 10
10
A
208 227Right-handed alpha
Helix 11
11
A
241 249Right-handed alpha
Helix 12
12
A
271 278Right-handed alpha
Helix 13
13
A
282 286Right-handed 310
Helix 14
14
A
308 320Right-handed alpha
Helix 15
15
A
368 378Right-handed alpha
Helix 16
16
A
397 399Right-handed 310
Helix 17
17
A
400 410Right-handed alpha
Helix 18
18
A
430 442Right-handed alpha
Helix 19
19
A
443 446Right-handed 310
Helix 20
20
A
466 483Right-handed alpha
Helix 21
21
A
489 493Right-handed 310
Helix 22
22
A
705 715Right-handed alpha
Helix 23
23
A
722 735Right-handed alpha
Helix 24
24
A
756 769Right-handed alpha
Helix 25
25
A
783 804Right-handed alpha
Helix 26
26
A
816 834Right-handed alpha
Helix 27
27
A
841 846Right-handed alpha
Helix 28
28
A
857 862Right-handed 310
Helix 29
29
A
863 868Right-handed alpha
Helix 30
30
A
877 886Right-handed alpha
Helix 31
31
A
920 938Right-handed alpha
Helix 32
32
A
939 942Right-handed 310
Helix 33
33
A
948 962Right-handed alpha
Helix 34
34
A
977 985Right-handed alpha
Helix 35
35
A
986 997Right-handed alpha
Helix 36
36
A
1021 1041Right-handed alpha
Helix 37
37
A
1044 1048Right-handed 310
Helix 38
38
A
1061 1073Right-handed alpha
Helix 39
39
A
1112 1126Right-handed alpha
Helix 40
40
A
1134 1145Right-handed alpha
Helix 41
41
A
1146 1149Right-handed 310
Helix 42
42
A
1150 1155Right-handed alpha
Helix 43
43
A
1200 1215Right-handed alpha
Helix 44
44
A
1236 1240Right-handed 310
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There are 14 sheets in PDB entry 3AGQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 67first strand
Strand 2
A
70 77anti-parallel
Strand 3
A
132 139anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 147first strand
Strand 2
A
152 157anti-parallel
Strand 3
A
255 260anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
360 365anti-parallel
Strand 3
A
298 303parallel
Strand 4
A
385 391parallel
Strand 5
A
414 415parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
360 365anti-parallel
Strand 3
A
298 303parallel
Strand 4
A
385 391parallel
Strand 5
A
417 420parallel
Strand 6
A
454 456parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 498first strand
Strand 2
A
576 578anti-parallel
Strand 3
A
528 530anti-parallel
Strand 4
A
536 537anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 503first strand
Strand 2
A
511 513anti-parallel
Strand 3
A
560 563anti-parallel
Strand 4
A
540 544anti-parallel
Strand 5
A
549 550anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 522first strand
Strand 2
A
552 554anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
614 616first strand
Strand 2
A
658 663anti-parallel
Strand 3
A
666 675anti-parallel
Strand 4
A
584 595anti-parallel
Strand 5
A
640 653anti-parallel
Strand 6
A
624 627anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
913 918first strand
Strand 2
A
900 907anti-parallel
Strand 3
A
1000 1002parallel
Strand 4
A
1008 1010anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
964 968first strand
Strand 2
A
1054 1058anti-parallel
Strand 3
A
1049 1051anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1087 1090first strand
Strand 2
A
1093 1096anti-parallel
Strand 3
A
1099 1100anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1157first strand
Strand 2
A
1166 1167parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1177 1179first strand
Strand 2
A
1182 1184anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1186 1195first strand
Strand 2
A
1247 1258anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il