Analysis of interatomic Contacts of Structural Units in PDB entry:
3AGR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AGR entry

There are 2 chains in PDB entry 3AGR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12MET 602
B
 ALA 12MET 602
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 3AGR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 32Right-handed alpha
Helix 2
2
A
73 76Right-handed 310
Helix 3
3
A
87 100Right-handed alpha
Helix 4
4
A
110 116Right-handed 310
Helix 5
5
A
117 144Right-handed alpha
Helix 6
6
A
145 156Right-handed alpha
Helix 7
7
A
165 168Right-handed 310
Helix 8
8
A
173 187Right-handed alpha
Helix 9
9
A
208 224Right-handed alpha
Helix 10
10
A
301 303Right-handed 310
Helix 11
11
A
304 318Right-handed alpha
Helix 12
12
A
323 325Right-handed 310
Helix 13
13
A
365 372Right-handed alpha
Helix 14
14
A
376 382Right-handed alpha
Helix 15
15
A
383 391Right-handed alpha
Helix 16
16
A
399 405Right-handed alpha
Helix 17
17
A
417 429Right-handed alpha
Helix 18
18
A
449 457Right-handed alpha
Helix 19
19
A
467 480Right-handed alpha
Helix 20
20
A
490 503Right-handed alpha
Helix 21
21
A
531 548Right-handed alpha
Helix 22
22
A
573 584Right-handed alpha
Helix 23
23
A
585 594Right-handed alpha
Helix 24
24
A
598 602Right-handed 310
Helix 25
25
B
15 34Right-handed alpha
Helix 26
26
B
73 76Right-handed 310
Helix 27
27
B
87 100Right-handed alpha
Helix 28
28
B
110 116Right-handed 310
Helix 29
29
B
117 144Right-handed alpha
Helix 30
30
B
145 156Right-handed alpha
Helix 31
31
B
173 187Right-handed alpha
Helix 32
32
B
208 224Right-handed alpha
Helix 33
33
B
304 317Right-handed alpha
Helix 34
34
B
365 372Right-handed alpha
Helix 35
35
B
376 382Right-handed alpha
Helix 36
36
B
384 392Right-handed alpha
Helix 37
37
B
399 404Right-handed alpha
Helix 38
38
B
417 429Right-handed alpha
Helix 39
39
B
449 457Right-handed alpha
Helix 40
40
B
467 479Right-handed alpha
Helix 41
41
B
490 503Right-handed alpha
Helix 42
42
B
530 548Right-handed alpha
Helix 43
43
B
573 584Right-handed alpha
Helix 44
44
B
585 594Right-handed alpha
Helix 45
45
B
598 602Right-handed 310
Back to top of page

There are 20 sheets in PDB entry 3AGR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
51 63anti-parallel
Strand 3
A
85 86anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
51 63anti-parallel
Strand 3
A
36 47anti-parallel
Strand 4
A
157 163parallel
Strand 5
A
197 198parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
157 163parallel
Strand 3
A
205 206parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 81first strand
Strand 2
A
51 63anti-parallel
Strand 3
A
36 47anti-parallel
Strand 4
A
157 163parallel
Strand 5
A
205 206parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
242 245anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
294 300anti-parallel
Strand 3
A
259 264anti-parallel
Strand 4
A
250 254anti-parallel
Strand 5
A
463 466parallel
Strand 6
A
555 557parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 330first strand
Strand 2
A
411 414parallel
Strand 3
A
338 340anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
354 356anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
506 508first strand
Strand 2
A
513 517anti-parallel
Strand 3
A
520 523anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 562first strand
Strand 2
A
568 571anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 71first strand
Strand 2
B
51 63anti-parallel
Strand 3
B
85 86anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
51 63anti-parallel
Strand 3
B
36 47anti-parallel
Strand 4
B
157 163parallel
Strand 5
B
197 198parallel
Back to list of sheets
Back to top of page

There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 198first strand
Strand 2
B
157 163parallel
Strand 3
B
205 206parallel
Back to list of sheets
Back to top of page

There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 81first strand
Strand 2
B
51 63anti-parallel
Strand 3
B
36 47anti-parallel
Strand 4
B
157 163parallel
Strand 5
B
205 206parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 236first strand
Strand 2
B
242 245anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 279first strand
Strand 2
B
294 300anti-parallel
Strand 3
B
259 264anti-parallel
Strand 4
B
250 254anti-parallel
Strand 5
B
463 466parallel
Strand 6
B
555 557parallel
Back to list of sheets
Back to top of page

There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 324first strand
Strand 2
B
327 330anti-parallel
Strand 3
B
411 414parallel
Strand 4
B
338 340anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 348first strand
Strand 2
B
354 356anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
506 507first strand
Strand 2
B
514 516anti-parallel
Strand 3
B
521 523anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
560 561first strand
Strand 2
B
570 571anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il