Analysis of interatomic Contacts of Structural Units in PDB entry:
3AGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AGV entry

There are 9 chains in PDB entry 3AGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 241LEU 443
B
 GLY 237SER 444
S
 G 1 G 5
S
 G 7 G 7
S
 G 16 A 19
U
 G 1 G 5
U
 G 7 G 7
U
 G 12 A 19
U
 A 24 A 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3AGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
246 252Right-handed alpha
Helix 2
2
A
309 315Right-handed alpha
Helix 3
3
A
354 360Right-handed 310
Helix 4
4
A
414 419Right-handed alpha
Helix 5
5
A
432 434Right-handed 310
Helix 6
6
B
246 252Right-handed alpha
Helix 7
7
B
309 316Right-handed alpha
Helix 8
8
B
354 360Right-handed 310
Helix 9
9
B
414 419Right-handed alpha
Helix 10
10
B
432 434Right-handed 310
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There are 10 sheets in PDB entry 3AGV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
305 307anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 284first strand
Strand 2
A
277 279anti-parallel
Strand 3
A
319 320anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
362 372anti-parallel
Strand 3
A
404 413anti-parallel
Strand 4
A
391 393anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
362 372anti-parallel
Strand 3
A
404 413anti-parallel
Strand 4
A
397 398anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
378 383anti-parallel
Strand 3
A
423 428anti-parallel
Strand 4
A
436 441anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 243first strand
Strand 2
B
258 266anti-parallel
Strand 3
B
299 307anti-parallel
Strand 4
B
288 295anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 284first strand
Strand 2
B
274 279anti-parallel
Strand 3
B
319 324anti-parallel
Strand 4
B
332 336anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 351first strand
Strand 2
B
362 372anti-parallel
Strand 3
B
404 413anti-parallel
Strand 4
B
391 393anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 351first strand
Strand 2
B
362 372anti-parallel
Strand 3
B
404 413anti-parallel
Strand 4
B
397 398anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 388first strand
Strand 2
B
378 383anti-parallel
Strand 3
B
423 428anti-parallel
Strand 4
B
436 441anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il