Analysis of interatomic Contacts of Structural Units in PDB entry:
3AJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AJA entry

There are 2 chains in PDB entry 3AJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 71PRO 334
B
 ALA 71PRO 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 3AJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
104 115Right-handed alpha
Helix 2
2
A
142 165Right-handed alpha
Helix 3
3
A
176 191Right-handed alpha
Helix 4
4
A
197 199Right-handed 310
Helix 5
5
A
228 233Right-handed alpha
Helix 6
6
A
236 242Right-handed alpha
Helix 7
7
A
254 258Right-handed 310
Helix 8
8
A
275 279Right-handed 310
Helix 9
9
A
283 293Right-handed alpha
Helix 10
10
A
316 331Right-handed alpha
Helix 11
11
B
104 115Right-handed alpha
Helix 12
12
B
142 165Right-handed alpha
Helix 13
13
B
176 191Right-handed alpha
Helix 14
14
B
197 199Right-handed 310
Helix 15
15
B
228 233Right-handed alpha
Helix 16
16
B
236 242Right-handed alpha
Helix 17
17
B
254 258Right-handed 310
Helix 18
18
B
275 279Right-handed 310
Helix 19
19
B
283 293Right-handed alpha
Helix 20
20
B
297 302Right-handed alpha
Helix 21
21
B
303 305Right-handed 310
Helix 22
22
B
316 331Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3AJA. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
76 81parallel
Strand 3
A
169 175parallel
Strand 4
A
201 207parallel
Strand 5
A
261 264parallel
Strand 6
A
218 219parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
314 315anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
76 81parallel
Strand 3
B
169 175parallel
Strand 4
B
201 207parallel
Strand 5
B
261 264parallel
Strand 6
B
218 219parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 311first strand
Strand 2
B
314 315anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il