Analysis of interatomic Contacts of Structural Units in PDB entry:
3AJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AJD entry

There is 1 chain in PDB entry 3AJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9ILE 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 3AJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 31Right-handed alpha
Helix 2
2
A
57 62Right-handed alpha
Helix 3
3
A
70 72Right-handed 310
Helix 4
4
A
73 80Right-handed alpha
Helix 5
5
A
95 105Right-handed alpha
Helix 6
6
A
117 131Right-handed alpha
Helix 7
7
A
142 153Right-handed alpha
Helix 8
8
A
179 184Right-handed alpha
Helix 9
9
A
185 188Right-handed 310
Helix 10
10
A
189 200Right-handed alpha
Helix 11
11
A
219 230Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3AJD. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
44 49anti-parallel
Strand 3
A
11 15anti-parallel
Strand 4
A
65 67anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 140first strand
Strand 2
A
110 115parallel
Strand 3
A
86 89parallel
Strand 4
A
157 164parallel
Strand 5
A
201 211parallel
Strand 6
A
266 273anti-parallel
Strand 7
A
233 236anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 140first strand
Strand 2
A
110 115parallel
Strand 3
A
86 89parallel
Strand 4
A
157 164parallel
Strand 5
A
201 211parallel
Strand 6
A
266 273anti-parallel
Strand 7
A
257 259anti-parallel
Strand 8
A
248 250anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il