Analysis of interatomic Contacts of Structural Units in PDB entry:
3AJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AJR entry

There are 2 chains in PDB entry 3AJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 314
B
 MET 1LYS 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 3AJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 24Right-handed alpha
Helix 2
2
A
50 61Right-handed alpha
Helix 3
3
A
73 80Right-handed alpha
Helix 4
4
A
80 102Right-handed alpha
Helix 5
5
A
114 116Right-handed 310
Helix 6
6
A
135 156Right-handed alpha
Helix 7
7
A
180 191Right-handed alpha
Helix 8
8
A
210 223Right-handed alpha
Helix 9
9
A
224 228Right-handed 310
Helix 10
10
A
242 252Right-handed alpha
Helix 11
11
A
264 271Right-handed alpha
Helix 12
12
A
279 287Right-handed alpha
Helix 13
13
A
293 309Right-handed alpha
Helix 14
14
B
11 24Right-handed alpha
Helix 15
15
B
50 61Right-handed alpha
Helix 16
16
B
73 80Right-handed alpha
Helix 17
17
B
80 102Right-handed alpha
Helix 18
18
B
114 116Right-handed 310
Helix 19
19
B
135 156Right-handed alpha
Helix 20
20
B
180 191Right-handed alpha
Helix 21
21
B
210 223Right-handed alpha
Helix 22
22
B
224 228Right-handed 310
Helix 23
23
B
242 254Right-handed alpha
Helix 24
24
B
264 272Right-handed alpha
Helix 25
25
B
279 287Right-handed alpha
Helix 26
26
B
293 308Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3AJR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
28 32parallel
Strand 3
A
2 5parallel
Strand 4
A
65 68parallel
Strand 5
A
106 112parallel
Strand 6
A
158 164parallel
Strand 7
A
234 235parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
205 209parallel
Strand 3
A
239 241anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
259 261parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
28 32parallel
Strand 3
B
2 5parallel
Strand 4
B
65 68parallel
Strand 5
B
106 112parallel
Strand 6
B
158 164parallel
Strand 7
B
232 235parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 168first strand
Strand 2
B
205 209parallel
Strand 3
B
239 241anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
B
259 261parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il