Analysis of interatomic Contacts of Structural Units in PDB entry:
3AJX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AJX entry

There are 4 chains in PDB entry 3AJX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1001ALA 1207
B
 MET 2001ALA 2207
C
 MET 3001ALA 3207
D
 MET 4001ALA 4207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3AJX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1011 1023Right-handed alpha
Helix 2
2
A
1024 1026Right-handed 310
Helix 3
3
A
1032 1040Right-handed alpha
Helix 4
4
A
1041 1051Right-handed alpha
Helix 5
5
A
1065 1076Right-handed alpha
Helix 6
6
A
1088 1103Right-handed alpha
Helix 7
7
A
1115 1126Right-handed alpha
Helix 8
8
A
1136 1141Right-handed alpha
Helix 9
9
A
1147 1158Right-handed alpha
Helix 10
10
A
1168 1170Right-handed 310
Helix 11
11
A
1171 1178Right-handed alpha
Helix 12
12
A
1186 1191Right-handed alpha
Helix 13
13
A
1194 1205Right-handed alpha
Helix 14
14
B
2011 2023Right-handed alpha
Helix 15
15
B
2024 2026Right-handed 310
Helix 16
16
B
2032 2040Right-handed alpha
Helix 17
17
B
2041 2051Right-handed alpha
Helix 18
18
B
2065 2076Right-handed alpha
Helix 19
19
B
2088 2103Right-handed alpha
Helix 20
20
B
2115 2125Right-handed alpha
Helix 21
21
B
2136 2141Right-handed alpha
Helix 22
22
B
2147 2158Right-handed alpha
Helix 23
23
B
2168 2170Right-handed 310
Helix 24
24
B
2171 2178Right-handed alpha
Helix 25
25
B
2186 2191Right-handed alpha
Helix 26
26
B
2194 2206Right-handed alpha
Helix 27
27
C
3011 3023Right-handed alpha
Helix 28
28
C
3024 3026Right-handed 310
Helix 29
29
C
3032 3040Right-handed alpha
Helix 30
30
C
3041 3051Right-handed alpha
Helix 31
31
C
3065 3076Right-handed alpha
Helix 32
32
C
3088 3103Right-handed alpha
Helix 33
33
C
3115 3126Right-handed alpha
Helix 34
34
C
3136 3141Right-handed alpha
Helix 35
35
C
3147 3158Right-handed alpha
Helix 36
36
C
3168 3170Right-handed 310
Helix 37
37
C
3171 3178Right-handed alpha
Helix 38
38
C
3186 3191Right-handed alpha
Helix 39
39
C
3194 3205Right-handed alpha
Helix 40
40
D
4011 4023Right-handed alpha
Helix 41
41
D
4024 4026Right-handed 310
Helix 42
42
D
4032 4040Right-handed alpha
Helix 43
43
D
4041 4051Right-handed alpha
Helix 44
44
D
4065 4076Right-handed alpha
Helix 45
45
D
4088 4102Right-handed alpha
Helix 46
46
D
4115 4125Right-handed alpha
Helix 47
47
D
4136 4141Right-handed alpha
Helix 48
48
D
4147 4158Right-handed alpha
Helix 49
49
D
4168 4170Right-handed 310
Helix 50
50
D
4171 4178Right-handed alpha
Helix 51
51
D
4186 4191Right-handed alpha
Helix 52
52
D
4194 4206Right-handed alpha
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There are 4 sheets in PDB entry 3AJX. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1002 1007first strand
Strand 2
A
1028 1031parallel
Strand 3
A
1055 1062parallel
Strand 4
A
1080 1084parallel
Strand 5
A
1105 1109parallel
Strand 6
A
1130 1134parallel
Strand 7
A
1161 1164parallel
Strand 8
A
1182 1185parallel
Strand 9
A
1002 1007parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2002 2007first strand
Strand 2
B
2028 2031parallel
Strand 3
B
2055 2062parallel
Strand 4
B
2080 2084parallel
Strand 5
B
2105 2109parallel
Strand 6
B
2130 2134parallel
Strand 7
B
2161 2164parallel
Strand 8
B
2182 2185parallel
Strand 9
B
2002 2007parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3002 3007first strand
Strand 2
C
3028 3031parallel
Strand 3
C
3055 3062parallel
Strand 4
C
3080 3084parallel
Strand 5
C
3105 3109parallel
Strand 6
C
3130 3134parallel
Strand 7
C
3161 3164parallel
Strand 8
C
3182 3185parallel
Strand 9
C
3002 3007parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4002 4007first strand
Strand 2
D
4028 4031parallel
Strand 3
D
4055 4062parallel
Strand 4
D
4080 4084parallel
Strand 5
D
4105 4109parallel
Strand 6
D
4130 4134parallel
Strand 7
D
4161 4164parallel
Strand 8
D
4182 4185parallel
Strand 9
D
4002 4007parallel
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