Analysis of interatomic Contacts of Structural Units in PDB entry:
3AKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AKJ entry

There are 2 chains in PDB entry 3AKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2LEU 295
B
 PRO 2LEU 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 3AKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 67Right-handed alpha
Helix 2
2
A
100 106Right-handed alpha
Helix 3
3
A
118 129Right-handed alpha
Helix 4
4
A
133 152Right-handed alpha
Helix 5
5
A
157 160Right-handed 310
Helix 6
6
A
189 198Right-handed alpha
Helix 7
7
A
199 209Right-handed alpha
Helix 8
8
A
224 232Right-handed alpha
Helix 9
9
A
234 245Right-handed alpha
Helix 10
10
A
246 248Right-handed 310
Helix 11
11
A
249 259Right-handed alpha
Helix 12
12
A
264 282Right-handed alpha
Helix 13
13
A
282 295Right-handed alpha
Helix 14
14
B
52 67Right-handed alpha
Helix 15
15
B
100 105Right-handed alpha
Helix 16
16
B
118 129Right-handed alpha
Helix 17
17
B
133 152Right-handed alpha
Helix 18
18
B
189 198Right-handed alpha
Helix 19
19
B
199 209Right-handed alpha
Helix 20
20
B
224 230Right-handed alpha
Helix 21
21
B
234 245Right-handed alpha
Helix 22
22
B
246 248Right-handed 310
Helix 23
23
B
249 259Right-handed alpha
Helix 24
24
B
264 282Right-handed alpha
Helix 25
25
B
282 295Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3AKJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
74 79parallel
Strand 3
A
82 88anti-parallel
Strand 4
A
32 37anti-parallel
Strand 5
A
24 29anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 99first strand
Strand 2
A
162 166anti-parallel
Strand 3
A
172 174anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
74 79parallel
Strand 3
B
82 88anti-parallel
Strand 4
B
32 37anti-parallel
Strand 5
B
24 29anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 99first strand
Strand 2
B
162 166anti-parallel
Strand 3
B
172 174anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il