Analysis of interatomic Contacts of Structural Units in PDB entry:
3AL0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AL0 entry

There are 3 chains in PDB entry 3AL0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4ALA 475
B
 MET 1GLU 482
C
 LYS 3PHE 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 3AL0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 15Right-handed alpha
Helix 2
2
A
20 25Right-handed 310
Helix 3
3
A
26 41Right-handed alpha
Helix 4
4
A
92 100Right-handed alpha
Helix 5
5
A
112 116Right-handed 310
Helix 6
6
A
144 149Right-handed alpha
Helix 7
7
A
166 172Right-handed alpha
Helix 8
8
A
208 215Right-handed alpha
Helix 9
9
A
251 255Right-handed 310
Helix 10
10
A
259 275Right-handed alpha
Helix 11
11
A
286 290Right-handed 310
Helix 12
12
A
291 307Right-handed alpha
Helix 13
13
A
323 336Right-handed alpha
Helix 14
14
A
337 351Right-handed alpha
Helix 15
15
A
352 356Right-handed 310
Helix 16
16
A
359 378Right-handed alpha
Helix 17
17
A
401 406Right-handed alpha
Helix 18
18
A
412 417Right-handed alpha
Helix 19
19
A
429 433Right-handed 310
Helix 20
20
A
448 459Right-handed alpha
Helix 21
21
B
53 67Right-handed alpha
Helix 22
22
B
148 151Right-handed 310
Helix 23
23
B
166 185Right-handed alpha
Helix 24
24
B
190 194Right-handed 310
Helix 25
25
B
224 237Right-handed alpha
Helix 26
26
B
288 293Right-handed alpha
Helix 27
27
B
304 315Right-handed alpha
Helix 28
28
B
317 325Right-handed alpha
Helix 29
29
B
327 341Right-handed alpha
Helix 30
30
B
343 353Right-handed alpha
Helix 31
31
B
353 359Right-handed alpha
Helix 32
32
B
372 384Right-handed alpha
Helix 33
33
B
391 396Right-handed alpha
Helix 34
34
B
396 404Right-handed alpha
Helix 35
35
B
406 415Right-handed alpha
Helix 36
36
B
424 435Right-handed alpha
Helix 37
37
B
436 444Right-handed alpha
Helix 38
38
B
451 461Right-handed alpha
Helix 39
39
B
467 479Right-handed alpha
Helix 40
40
C
7 14Right-handed alpha
Helix 41
41
C
24 40Right-handed alpha
Helix 42
42
C
73 79Right-handed alpha
Helix 43
43
C
142 160Right-handed alpha
Helix 44
44
C
176 190Right-handed alpha
Helix 45
45
C
212 226Right-handed alpha
Helix 46
46
C
250 256Right-handed alpha
Helix 47
47
C
301 313Right-handed alpha
Helix 48
48
C
323 326Right-handed 310
Helix 49
49
C
327 336Right-handed alpha
Helix 50
50
C
367 374Right-handed alpha
Helix 51
51
C
377 386Right-handed alpha
Helix 52
52
C
403 407Right-handed 310
Helix 53
53
C
420 433Right-handed alpha
Helix 54
54
C
436 452Right-handed alpha
Helix 55
55
C
462 472Right-handed alpha
Helix 56
56
C
478 483Right-handed alpha
Helix 57
57
C
484 488Right-handed 310
Helix 58
58
C
497 502Right-handed alpha
Helix 59
59
C
507 521Right-handed alpha
Helix 60
60
C
527 529Right-handed 310
Helix 61
61
C
530 538Right-handed alpha
Helix 62
62
C
544 557Right-handed alpha
Helix 63
63
C
564 569Right-handed alpha
Helix 64
64
C
572 583Right-handed alpha
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There are 11 sheets in PDB entry 3AL0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 109first strand
Strand 2
A
62 66parallel
Strand 3
A
156 160parallel
Strand 4
A
200 204anti-parallel
Strand 5
A
176 179anti-parallel
Strand 6
A
422 425anti-parallel
Strand 7
A
437 440anti-parallel
Strand 8
A
386 387anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 108first strand
Strand 2
B
115 125anti-parallel
Strand 3
B
155 160anti-parallel
Strand 4
B
8 14anti-parallel
Strand 5
B
196 201anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
B
101 102anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 75first strand
Strand 2
B
285 286anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 94first strand
Strand 2
B
78 81anti-parallel
Strand 3
B
277 278anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 133first strand
Strand 2
B
143 147anti-parallel
Strand 3
C
88 92anti-parallel
Strand 4
C
84 85anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
254 256first strand
Strand 2
B
261 263anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 133first strand
Strand 2
C
162 165parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 242first strand
Strand 2
C
229 235anti-parallel
Strand 3
C
260 264anti-parallel
Strand 4
C
291 294anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
272 273first strand
Strand 2
C
281 282anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
320 321first strand
Strand 2
C
347 348parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il