Analysis of interatomic Contacts of Structural Units in PDB entry:
3AL8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AL8 entry

There are 2 chains in PDB entry 3AL8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 19CYS 568
B
 PRO 36CYS 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3AL8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
100 110Right-handed alpha
Helix 2
2
A
332 339Right-handed alpha
Helix 3
3
A
374 378Right-handed 310
Helix 4
4
A
380 384Right-handed 310
Helix 5
5
A
385 395Right-handed alpha
Helix 6
6
A
404 408Right-handed 310
Helix 7
7
A
473 478Right-handed alpha
Helix 8
8
A
514 518Right-handed 310
Helix 9
9
A
521 528Right-handed alpha
Helix 10
10
B
132 135Right-handed 310
Helix 11
11
B
154 158Right-handed 310
Helix 12
12
B
229 236Right-handed alpha
Helix 13
13
B
319 327Right-handed alpha
Helix 14
14
B
360 375Right-handed alpha
Helix 15
15
B
383 388Right-handed alpha
Helix 16
16
B
510 514Right-handed 310
Helix 17
17
B
516 524Right-handed alpha
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There are 20 sheets in PDB entry 3AL8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
40 41parallel
Strand 3
A
507 511anti-parallel
Strand 4
A
498 503anti-parallel
Strand 5
A
487 493anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
67 71anti-parallel
Strand 3
A
76 80anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 126first strand
Strand 2
A
131 136anti-parallel
Strand 3
A
143 148anti-parallel
Strand 4
A
154 160anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 178first strand
Strand 2
A
181 187anti-parallel
Strand 3
A
195 200anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 228first strand
Strand 2
A
231 239anti-parallel
Strand 3
A
250 258anti-parallel
Strand 4
A
277 281anti-parallel
Strand 5
A
397 402parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
291 292anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 299first strand
Strand 2
A
308 316anti-parallel
Strand 3
A
303 305anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 299first strand
Strand 2
A
308 316anti-parallel
Strand 3
A
325 331anti-parallel
Strand 4
A
411 413anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
354 355anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 429first strand
Strand 2
A
435 441anti-parallel
Strand 3
A
446 454anti-parallel
Strand 4
A
460 470anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 544first strand
Strand 2
A
533 536anti-parallel
Strand 3
A
553 554anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 42first strand
Strand 2
B
502 507anti-parallel
Strand 3
B
494 499anti-parallel
Strand 4
B
486 488anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
62 66anti-parallel
Strand 3
B
69 73anti-parallel
Strand 4
B
79 81anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
108 110anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 120first strand
Strand 2
B
125 130anti-parallel
Strand 3
B
137 141anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 173first strand
Strand 2
B
181 186anti-parallel
Strand 3
B
198 202anti-parallel
Strand 4
B
225 226anti-parallel
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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 249first strand
Strand 2
B
252 260anti-parallel
Strand 3
B
276 284anti-parallel
Strand 4
B
294 302anti-parallel
Strand 5
B
419 420parallel
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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 249first strand
Strand 2
B
252 260anti-parallel
Strand 3
B
276 284anti-parallel
Strand 4
B
294 302anti-parallel
Strand 5
B
305 316anti-parallel
Strand 6
B
334 341anti-parallel
Strand 7
B
353 359anti-parallel
Strand 8
B
422 427anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
432 440first strand
Strand 2
B
443 450anti-parallel
Strand 3
B
454 462anti-parallel
Strand 4
B
466 474anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
528 530first strand
Strand 2
B
537 539anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il