Analysis of interatomic Contacts of Structural Units in PDB entry:
3AMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AMI entry

There are 2 chains in PDB entry 3AMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 29PRO 450
B
 PRO 29PRO 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3AMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 31Right-handed 310
Helix 2
2
A
64 68Right-handed 310
Helix 3
3
A
74 83Right-handed alpha
Helix 4
4
A
93 102Right-handed alpha
Helix 5
5
A
125 139Right-handed alpha
Helix 6
6
A
143 161Right-handed alpha
Helix 7
7
A
162 164Right-handed 310
Helix 8
8
A
165 179Right-handed alpha
Helix 9
9
A
182 186Right-handed 310
Helix 10
10
A
191 198Right-handed alpha
Helix 11
11
A
199 211Right-handed alpha
Helix 12
12
A
212 214Right-handed 310
Helix 13
13
A
225 236Right-handed alpha
Helix 14
14
A
237 240Right-handed 310
Helix 15
15
A
288 303Right-handed alpha
Helix 16
16
A
307 313Right-handed alpha
Helix 17
17
A
349 368Right-handed alpha
Helix 18
18
A
370 388Right-handed alpha
Helix 19
19
A
391 404Right-handed alpha
Helix 20
20
A
410 421Right-handed alpha
Helix 21
21
A
423 433Right-handed alpha
Helix 22
22
B
29 31Right-handed 310
Helix 23
23
B
64 68Right-handed 310
Helix 24
24
B
74 83Right-handed alpha
Helix 25
25
B
93 102Right-handed alpha
Helix 26
26
B
125 140Right-handed alpha
Helix 27
27
B
143 161Right-handed alpha
Helix 28
28
B
165 179Right-handed alpha
Helix 29
29
B
182 186Right-handed 310
Helix 30
30
B
191 198Right-handed alpha
Helix 31
31
B
199 211Right-handed alpha
Helix 32
32
B
212 214Right-handed 310
Helix 33
33
B
225 235Right-handed alpha
Helix 34
34
B
236 240Right-handed 310
Helix 35
35
B
288 303Right-handed alpha
Helix 36
36
B
307 313Right-handed alpha
Helix 37
37
B
349 368Right-handed alpha
Helix 38
38
B
370 391Right-handed alpha
Helix 39
39
B
391 404Right-handed alpha
Helix 40
40
B
410 420Right-handed alpha
Helix 41
41
B
423 432Right-handed alpha
Helix 42
42
B
433 435Right-handed 310
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There are 3 sheets in PDB entry 3AMI. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
43 48anti-parallel
Strand 3
A
216 222parallel
Strand 4
A
54 61anti-parallel
Strand 5
A
115 122anti-parallel
Strand 6
A
105 110anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 326first strand
Strand 2
A
336 344anti-parallel
Strand 3
A
272 279anti-parallel
Strand 4
A
440 448anti-parallel
Strand 5
A
260 267parallel
Strand 6
B
260 267anti-parallel
Strand 7
B
440 448parallel
Strand 8
B
272 279anti-parallel
Strand 9
B
336 344anti-parallel
Strand 10
B
320 326anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 37first strand
Strand 2
B
43 48anti-parallel
Strand 3
B
216 222parallel
Strand 4
B
54 61anti-parallel
Strand 5
B
115 122anti-parallel
Strand 6
B
105 110anti-parallel
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