Analysis of interatomic Contacts of Structural Units in PDB entry:
3AMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AMJ entry

There are 4 chains in PDB entry 3AMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 21LYS 434
C
 PRO 29PRO 450
D
 ALA 21VAL 431
A
 PRO 29GLY 86
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 80 helices in PDB entry 3AMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
55 59Right-handed 310
Helix 2
2
B
65 73Right-handed alpha
Helix 3
3
B
87 97Right-handed alpha
Helix 4
4
B
119 136Right-handed alpha
Helix 5
5
B
140 159Right-handed alpha
Helix 6
6
B
161 176Right-handed alpha
Helix 7
7
B
178 182Right-handed 310
Helix 8
8
B
185 192Right-handed alpha
Helix 9
9
B
193 205Right-handed alpha
Helix 10
10
B
219 230Right-handed alpha
Helix 11
11
B
278 290Right-handed alpha
Helix 12
12
B
292 295Right-handed 310
Helix 13
13
B
296 303Right-handed alpha
Helix 14
14
B
335 354Right-handed alpha
Helix 15
15
B
356 370Right-handed alpha
Helix 16
16
B
371 376Right-handed 310
Helix 17
17
B
377 391Right-handed alpha
Helix 18
18
B
400 407Right-handed alpha
Helix 19
19
B
409 421Right-handed alpha
Helix 20
20
B
422 425Right-handed 310
Helix 21
21
C
64 68Right-handed 310
Helix 22
22
C
74 83Right-handed alpha
Helix 23
23
C
93 102Right-handed alpha
Helix 24
24
C
125 137Right-handed alpha
Helix 25
25
C
143 162Right-handed alpha
Helix 26
26
C
165 179Right-handed alpha
Helix 27
27
C
182 186Right-handed 310
Helix 28
28
C
191 198Right-handed alpha
Helix 29
29
C
199 211Right-handed alpha
Helix 30
30
C
212 214Right-handed 310
Helix 31
31
C
225 235Right-handed alpha
Helix 32
32
C
236 240Right-handed 310
Helix 33
33
C
288 303Right-handed alpha
Helix 34
34
C
307 313Right-handed alpha
Helix 35
35
C
349 368Right-handed alpha
Helix 36
36
C
370 391Right-handed alpha
Helix 37
37
C
391 404Right-handed alpha
Helix 38
38
C
408 410Right-handed 310
Helix 39
39
C
411 419Right-handed alpha
Helix 40
40
C
420 422Right-handed 310
Helix 41
41
C
423 433Right-handed alpha
Helix 42
42
D
55 59Right-handed 310
Helix 43
43
D
65 74Right-handed alpha
Helix 44
44
D
87 96Right-handed alpha
Helix 45
45
D
119 136Right-handed alpha
Helix 46
46
D
140 159Right-handed alpha
Helix 47
47
D
161 176Right-handed alpha
Helix 48
48
D
178 182Right-handed 310
Helix 49
49
D
185 191Right-handed alpha
Helix 50
50
D
193 205Right-handed alpha
Helix 51
51
D
206 209Right-handed 310
Helix 52
52
D
219 232Right-handed alpha
Helix 53
53
D
278 290Right-handed alpha
Helix 54
54
D
296 303Right-handed alpha
Helix 55
55
D
336 354Right-handed alpha
Helix 56
56
D
356 370Right-handed alpha
Helix 57
57
D
371 376Right-handed 310
Helix 58
58
D
377 391Right-handed alpha
Helix 59
59
D
401 408Right-handed alpha
Helix 60
60
D
409 421Right-handed alpha
Helix 61
61
D
422 426Right-handed 310
Helix 62
62
A
64 68Right-handed 310
Helix 63
63
A
74 83Right-handed alpha
Helix 64
64
A
93 102Right-handed alpha
Helix 65
65
A
125 139Right-handed alpha
Helix 66
66
A
143 162Right-handed alpha
Helix 67
67
A
165 179Right-handed alpha
Helix 68
68
A
182 186Right-handed 310
Helix 69
69
A
191 198Right-handed alpha
Helix 70
70
A
199 211Right-handed alpha
Helix 71
71
A
212 214Right-handed 310
Helix 72
72
A
225 236Right-handed alpha
Helix 73
73
A
237 240Right-handed 310
Helix 74
74
A
288 303Right-handed alpha
Helix 75
75
A
307 314Right-handed alpha
Helix 76
76
A
349 368Right-handed alpha
Helix 77
77
A
370 388Right-handed alpha
Helix 78
78
A
391 404Right-handed alpha
Helix 79
79
A
410 421Right-handed alpha
Helix 80
80
A
423 433Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 3AMJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 28first strand
Strand 2
B
34 39anti-parallel
Strand 3
B
211 216parallel
Strand 4
B
45 52anti-parallel
Strand 5
B
110 117anti-parallel
Strand 6
B
100 105anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
85 86anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 257first strand
Strand 2
B
427 432parallel
Strand 3
B
262 272anti-parallel
Strand 4
B
323 332anti-parallel
Strand 5
B
309 316anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 37first strand
Strand 2
C
43 48anti-parallel
Strand 3
C
216 222parallel
Strand 4
C
54 61anti-parallel
Strand 5
C
115 122anti-parallel
Strand 6
C
105 110anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
320 327first strand
Strand 2
C
336 344anti-parallel
Strand 3
C
272 279anti-parallel
Strand 4
C
440 448anti-parallel
Strand 5
C
260 267parallel
Strand 6
A
260 267anti-parallel
Strand 7
A
440 448parallel
Strand 8
A
272 279anti-parallel
Strand 9
A
336 344anti-parallel
Strand 10
A
320 328anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 28first strand
Strand 2
D
34 39anti-parallel
Strand 3
D
211 216parallel
Strand 4
D
45 52anti-parallel
Strand 5
D
110 117anti-parallel
Strand 6
D
100 105anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
77 78first strand
Strand 2
D
85 86anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
253 255first strand
Strand 2
D
427 430parallel
Strand 3
D
264 272anti-parallel
Strand 4
D
323 330anti-parallel
Strand 5
D
313 316anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
43 48anti-parallel
Strand 3
A
216 222parallel
Strand 4
A
54 61anti-parallel
Strand 5
A
115 122anti-parallel
Strand 6
A
105 110anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il