Analysis of interatomic Contacts of Structural Units in PDB entry:
3AOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AOD entry

There are 3 chains in PDB entry 3AOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 1036
B
 MET 1LYS 1036
C
 MET 1LYS 1036
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are139 helices in PDB entry 3AOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 6Right-handed 310
Helix 2
2
A
10 28Right-handed alpha
Helix 3
3
A
53 61Right-handed alpha
Helix 4
4
A
61 67Right-handed alpha
Helix 5
5
A
99 112Right-handed alpha
Helix 6
6
A
114 118Right-handed 310
Helix 7
7
A
119 126Right-handed alpha
Helix 8
8
A
150 161Right-handed alpha
Helix 9
9
A
161 168Right-handed alpha
Helix 10
10
A
189 195Right-handed alpha
Helix 11
11
A
199 211Right-handed alpha
Helix 12
12
A
242 248Right-handed alpha
Helix 13
13
A
261 264Right-handed 310
Helix 14
14
A
300 312Right-handed alpha
Helix 15
15
A
329 335Right-handed alpha
Helix 16
16
A
340 360Right-handed alpha
Helix 17
17
A
367 386Right-handed alpha
Helix 18
18
A
391 400Right-handed alpha
Helix 19
19
A
401 415Right-handed alpha
Helix 20
20
A
426 435Right-handed alpha
Helix 21
21
A
438 451Right-handed alpha
Helix 22
22
A
461 486Right-handed alpha
Helix 23
23
A
487 494Right-handed alpha
Helix 24
24
A
517 532Right-handed alpha
Helix 25
25
A
541 559Right-handed alpha
Helix 26
26
A
583 600Right-handed alpha
Helix 27
27
A
639 642Right-handed 310
Helix 28
28
A
643 655Right-handed alpha
Helix 29
29
A
691 708Right-handed alpha
Helix 30
30
A
709 713Right-handed 310
Helix 31
31
A
732 739Right-handed alpha
Helix 32
32
A
742 755Right-handed alpha
Helix 33
33
A
776 780Right-handed 310
Helix 34
34
A
782 788Right-handed 310
Helix 35
35
A
802 804Right-handed 310
Helix 36
36
A
836 849Right-handed alpha
Helix 37
37
A
861 866Right-handed alpha
Helix 38
38
A
867 870Right-handed 310
Helix 39
39
A
872 892Right-handed alpha
Helix 40
40
A
898 903Right-handed alpha
Helix 41
41
A
904 913Right-handed alpha
Helix 42
42
A
924 955Right-handed alpha
Helix 43
43
A
961 986Right-handed alpha
Helix 44
44
A
998 1016Right-handed alpha
Helix 45
45
A
1017 1032Right-handed alpha
Helix 46
46
B
8 26Right-handed alpha
Helix 47
47
B
27 29Right-handed 310
Helix 48
48
B
53 57Right-handed 310
Helix 49
49
B
61 68Right-handed alpha
Helix 50
50
B
99 115Right-handed alpha
Helix 51
51
B
116 118Right-handed 310
Helix 52
52
B
150 162Right-handed alpha
Helix 53
53
B
162 167Right-handed alpha
Helix 54
54
B
189 196Right-handed alpha
Helix 55
55
B
199 211Right-handed alpha
Helix 56
56
B
303 313Right-handed alpha
Helix 57
57
B
329 350Right-handed alpha
Helix 58
58
B
370 386Right-handed alpha
Helix 59
59
B
391 401Right-handed alpha
Helix 60
60
B
402 404Right-handed 310
Helix 61
61
B
406 411Right-handed alpha
Helix 62
62
B
413 418Right-handed alpha
Helix 63
63
B
427 452Right-handed alpha
Helix 64
64
B
454 459Right-handed 310
Helix 65
65
B
461 485Right-handed alpha
Helix 66
66
B
489 497Right-handed alpha
Helix 67
67
B
517 522Right-handed alpha
Helix 68
68
B
522 537Right-handed alpha
Helix 69
69
B
544 550Right-handed alpha
Helix 70
70
B
551 556Right-handed alpha
Helix 71
71
B
583 600Right-handed alpha
Helix 72
72
B
639 642Right-handed 310
Helix 73
73
B
643 654Right-handed alpha
Helix 74
74
B
693 699Right-handed alpha
Helix 75
75
B
702 707Right-handed alpha
Helix 76
76
B
733 739Right-handed alpha
Helix 77
77
B
742 756Right-handed alpha
Helix 78
78
B
784 788Right-handed 310
Helix 79
79
B
802 804Right-handed 310
Helix 80
80
B
836 849Right-handed alpha
Helix 81
81
B
860 868Right-handed alpha
Helix 82
82
B
872 892Right-handed alpha
Helix 83
83
B
897 902Right-handed alpha
Helix 84
84
B
903 907Right-handed 310
Helix 85
85
B
908 919Right-handed alpha
Helix 86
86
B
926 956Right-handed alpha
Helix 87
87
B
963 971Right-handed alpha
Helix 88
88
B
972 986Right-handed alpha
Helix 89
89
B
986 991Right-handed alpha
Helix 90
90
B
1000 1005Right-handed alpha
Helix 91
91
B
1008 1013Right-handed alpha
Helix 92
92
B
1015 1020Right-handed alpha
Helix 93
93
B
1021 1033Right-handed alpha
Helix 94
94
C
2 7Right-handed alpha
Helix 95
95
C
10 30Right-handed alpha
Helix 96
96
C
53 61Right-handed alpha
Helix 97
97
C
61 69Right-handed alpha
Helix 98
98
C
99 115Right-handed alpha
Helix 99
99
C
116 118Right-handed 310
Helix 100
100
C
119 126Right-handed alpha
Helix 101
101
C
150 162Right-handed alpha
Helix 102
102
C
162 169Right-handed alpha
Helix 103
103
C
189 196Right-handed alpha
Helix 104
104
C
199 211Right-handed alpha
Helix 105
105
C
242 248Right-handed alpha
Helix 106
106
C
298 314Right-handed alpha
Helix 107
107
C
315 317Right-handed 310
Helix 108
108
C
329 350Right-handed alpha
Helix 109
109
C
365 370Right-handed alpha
Helix 110
110
C
372 386Right-handed alpha
Helix 111
111
C
391 411Right-handed alpha
Helix 112
112
C
413 418Right-handed alpha
Helix 113
113
C
419 421Right-handed 310
Helix 114
114
C
427 435Right-handed alpha
Helix 115
115
C
438 454Right-handed alpha
Helix 116
116
C
455 457Right-handed 310
Helix 117
117
C
460 465Right-handed alpha
Helix 118
118
C
466 486Right-handed alpha
Helix 119
119
C
519 522Right-handed 310
Helix 120
120
C
523 531Right-handed alpha
Helix 121
121
C
543 552Right-handed alpha
Helix 122
122
C
583 601Right-handed alpha
Helix 123
123
C
602 604Right-handed 310
Helix 124
124
C
643 655Right-handed alpha
Helix 125
125
C
691 709Right-handed alpha
Helix 126
126
C
732 737Right-handed alpha
Helix 127
127
C
742 755Right-handed alpha
Helix 128
128
C
777 780Right-handed 310
Helix 129
129
C
782 788Right-handed 310
Helix 130
130
C
836 851Right-handed alpha
Helix 131
131
C
861 864Right-handed 310
Helix 132
132
C
877 893Right-handed alpha
Helix 133
133
C
897 903Right-handed alpha
Helix 134
134
C
905 913Right-handed alpha
Helix 135
135
C
924 933Right-handed alpha
Helix 136
136
C
933 955Right-handed alpha
Helix 137
137
C
961 971Right-handed alpha
Helix 138
138
C
974 991Right-handed alpha
Helix 139
139
C
996 1031Right-handed alpha
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There are 22 sheets in PDB entry 3AOD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 131first strand
Strand 2
A
42 48anti-parallel
Strand 3
A
87 94anti-parallel
Strand 4
A
75 83anti-parallel
Strand 5
A
815 819anti-parallel
Strand 6
A
822 829anti-parallel
Strand 7
A
717 718anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 131first strand
Strand 2
A
42 48anti-parallel
Strand 3
A
87 94anti-parallel
Strand 4
A
75 83anti-parallel
Strand 5
A
815 819anti-parallel
Strand 6
A
822 829anti-parallel
Strand 7
A
680 685anti-parallel
Strand 8
A
856 859anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
284 292anti-parallel
Strand 3
A
136 143anti-parallel
Strand 4
A
323 324anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
284 292anti-parallel
Strand 3
A
278 281anti-parallel
Strand 4
A
606 615anti-parallel
Strand 5
A
620 631anti-parallel
Strand 6
A
571 577anti-parallel
Strand 7
A
662 666anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
184 188anti-parallel
Strand 3
A
768 773parallel
Strand 4
A
757 763anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
808 812first strand
Strand 2
A
724 728anti-parallel
Strand 3
C
233 235parallel
Strand 4
C
215 218anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
790 792first strand
Strand 2
A
798 800anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
42 47anti-parallel
Strand 3
B
88 94anti-parallel
Strand 4
B
75 81anti-parallel
Strand 5
B
817 819anti-parallel
Strand 6
B
822 828anti-parallel
Strand 7
B
717 718anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
42 47anti-parallel
Strand 3
B
88 94anti-parallel
Strand 4
B
75 81anti-parallel
Strand 5
B
817 819anti-parallel
Strand 6
B
822 828anti-parallel
Strand 7
B
682 686anti-parallel
Strand 8
B
855 859anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 178first strand
Strand 2
B
287 293anti-parallel
Strand 3
B
141 144anti-parallel
Strand 4
B
321 324anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 272first strand
Strand 2
B
182 188anti-parallel
Strand 3
B
767 773parallel
Strand 4
B
757 764anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 219first strand
Strand 2
B
232 235anti-parallel
Strand 3
C
724 729parallel
Strand 4
C
807 812anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 253first strand
Strand 2
B
259 260anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 285first strand
Strand 2
B
279 281anti-parallel
Strand 3
B
606 612anti-parallel
Strand 4
B
624 631anti-parallel
Strand 5
B
571 577anti-parallel
Strand 6
B
662 664anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
725 727first strand
Strand 2
B
809 811anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
790 791first strand
Strand 2
B
799 800anti-parallel
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There are 14 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
665 666first strand
Strand 2
C
571 577anti-parallel
Strand 3
C
624 631anti-parallel
Strand 4
C
606 613anti-parallel
Strand 5
C
278 281anti-parallel
Strand 6
C
284 294anti-parallel
Strand 7
C
128 144anti-parallel
Strand 8
C
42 46anti-parallel
Strand 9
C
91 94anti-parallel
Strand 10
C
75 83anti-parallel
Strand 11
C
815 819anti-parallel
Strand 12
C
822 830anti-parallel
Strand 13
C
679 686anti-parallel
Strand 14
C
855 859anti-parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
665 666first strand
Strand 2
C
571 577anti-parallel
Strand 3
C
624 631anti-parallel
Strand 4
C
606 613anti-parallel
Strand 5
C
278 281anti-parallel
Strand 6
C
172 177first strand
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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
321 324first strand
Strand 2
C
128 144anti-parallel
Strand 3
C
42 46anti-parallel
Strand 4
C
91 94anti-parallel
Strand 5
C
75 83anti-parallel
Strand 6
C
815 819anti-parallel
Strand 7
C
717 718first strand
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
266 272first strand
Strand 2
C
182 188anti-parallel
Strand 3
C
767 775parallel
Strand 4
C
757 764anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
250 253first strand
Strand 2
C
259 261anti-parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
790 792first strand
Strand 2
C
798 800anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il