Analysis of interatomic Contacts of Structural Units in PDB entry:
3APY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3APY entry

There are 8 chains in PDB entry 3APY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 291
B
 MET 1PRO 291
C
 MET 1PRO 291
D
 MET 1PRO 291
E
 MET 1PRO 291
F
 MET 1PRO 291
G
 MET 1PRO 291
H
 MET 1PRO 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are101 helices in PDB entry 3APY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 9Right-handed alpha
Helix 2
2
A
24 39Right-handed alpha
Helix 3
3
A
40 42Right-handed 310
Helix 4
4
A
56 70Right-handed alpha
Helix 5
5
A
84 97Right-handed alpha
Helix 6
6
A
126 139Right-handed alpha
Helix 7
7
A
140 142Right-handed 310
Helix 8
8
A
158 174Right-handed alpha
Helix 9
9
A
184 198Right-handed alpha
Helix 10
10
A
213 225Right-handed alpha
Helix 11
11
A
230 240Right-handed alpha
Helix 12
12
A
242 264Right-handed alpha
Helix 13
13
A
277 287Right-handed alpha
Helix 14
14
B
2 9Right-handed alpha
Helix 15
15
B
24 40Right-handed alpha
Helix 16
16
B
51 55Right-handed 310
Helix 17
17
B
56 69Right-handed alpha
Helix 18
18
B
84 98Right-handed alpha
Helix 19
19
B
126 139Right-handed alpha
Helix 20
20
B
140 142Right-handed 310
Helix 21
21
B
158 174Right-handed alpha
Helix 22
22
B
185 198Right-handed alpha
Helix 23
23
B
213 225Right-handed alpha
Helix 24
24
B
230 240Right-handed alpha
Helix 25
25
B
242 264Right-handed alpha
Helix 26
26
B
277 287Right-handed alpha
Helix 27
27
C
2 10Right-handed alpha
Helix 28
28
C
24 40Right-handed alpha
Helix 29
29
C
56 70Right-handed alpha
Helix 30
30
C
84 97Right-handed alpha
Helix 31
31
C
126 139Right-handed alpha
Helix 32
32
C
140 142Right-handed 310
Helix 33
33
C
158 174Right-handed alpha
Helix 34
34
C
184 198Right-handed alpha
Helix 35
35
C
213 225Right-handed alpha
Helix 36
36
C
230 239Right-handed alpha
Helix 37
37
C
242 264Right-handed alpha
Helix 38
38
C
277 287Right-handed alpha
Helix 39
39
D
2 9Right-handed alpha
Helix 40
40
D
24 40Right-handed alpha
Helix 41
41
D
56 69Right-handed alpha
Helix 42
42
D
84 98Right-handed alpha
Helix 43
43
D
126 139Right-handed alpha
Helix 44
44
D
158 172Right-handed alpha
Helix 45
45
D
185 198Right-handed alpha
Helix 46
46
D
213 225Right-handed alpha
Helix 47
47
D
230 239Right-handed alpha
Helix 48
48
D
242 264Right-handed alpha
Helix 49
49
D
277 287Right-handed alpha
Helix 50
50
E
2 10Right-handed alpha
Helix 51
51
E
24 40Right-handed alpha
Helix 52
52
E
51 55Right-handed 310
Helix 53
53
E
56 70Right-handed alpha
Helix 54
54
E
84 98Right-handed alpha
Helix 55
55
E
126 139Right-handed alpha
Helix 56
56
E
140 142Right-handed 310
Helix 57
57
E
158 174Right-handed alpha
Helix 58
58
E
184 198Right-handed alpha
Helix 59
59
E
213 225Right-handed alpha
Helix 60
60
E
230 238Right-handed alpha
Helix 61
61
E
242 265Right-handed alpha
Helix 62
62
E
277 287Right-handed alpha
Helix 63
63
F
2 9Right-handed alpha
Helix 64
64
F
24 40Right-handed alpha
Helix 65
65
F
51 55Right-handed 310
Helix 66
66
F
56 69Right-handed alpha
Helix 67
67
F
84 98Right-handed alpha
Helix 68
68
F
126 139Right-handed alpha
Helix 69
69
F
140 142Right-handed 310
Helix 70
70
F
158 172Right-handed alpha
Helix 71
71
F
184 198Right-handed alpha
Helix 72
72
F
213 225Right-handed alpha
Helix 73
73
F
230 240Right-handed alpha
Helix 74
74
F
242 264Right-handed alpha
Helix 75
75
F
277 287Right-handed alpha
Helix 76
76
G
2 9Right-handed alpha
Helix 77
77
G
24 39Right-handed alpha
Helix 78
78
G
40 42Right-handed 310
Helix 79
79
G
51 55Right-handed 310
Helix 80
80
G
56 69Right-handed alpha
Helix 81
81
G
84 97Right-handed alpha
Helix 82
82
G
126 139Right-handed alpha
Helix 83
83
G
140 142Right-handed 310
Helix 84
84
G
158 172Right-handed alpha
Helix 85
85
G
185 198Right-handed alpha
Helix 86
86
G
213 225Right-handed alpha
Helix 87
87
G
230 240Right-handed alpha
Helix 88
88
G
242 264Right-handed alpha
Helix 89
89
G
277 288Right-handed alpha
Helix 90
90
H
2 9Right-handed alpha
Helix 91
91
H
24 39Right-handed alpha
Helix 92
92
H
40 42Right-handed 310
Helix 93
93
H
56 70Right-handed alpha
Helix 94
94
H
84 98Right-handed alpha
Helix 95
95
H
126 139Right-handed alpha
Helix 96
96
H
158 174Right-handed alpha
Helix 97
97
H
185 198Right-handed alpha
Helix 98
98
H
213 225Right-handed alpha
Helix 99
99
H
230 239Right-handed alpha
Helix 100
100
H
242 264Right-handed alpha
Helix 101
101
H
277 287Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 3APY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 19first strand
Strand 2
A
45 48parallel
Strand 3
A
74 78parallel
Strand 4
A
102 105parallel
Strand 5
A
143 148parallel
Strand 6
A
176 181parallel
Strand 7
A
204 208parallel
Strand 8
A
268 272parallel
Strand 9
A
14 19parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
B
227 229anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 19first strand
Strand 2
B
45 48parallel
Strand 3
B
74 78parallel
Strand 4
B
102 105parallel
Strand 5
B
143 148parallel
Strand 6
B
176 181parallel
Strand 7
B
204 208parallel
Strand 8
B
268 272parallel
Strand 9
B
14 19parallel
Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 19first strand
Strand 2
C
45 48parallel
Strand 3
C
74 79parallel
Strand 4
C
102 106parallel
Strand 5
C
143 148parallel
Strand 6
C
176 181parallel
Strand 7
C
204 208parallel
Strand 8
C
268 272parallel
Strand 9
C
14 19parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
227 229first strand
Strand 2
D
227 229anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
204 205first strand
Strand 2
D
176 179parallel
Strand 3
D
143 148parallel
Strand 4
D
102 105parallel
Strand 5
D
74 78parallel
Strand 6
D
45 48parallel
Strand 7
D
14 19parallel
Strand 8
D
268 272parallel
Strand 9
D
207 208parallel
Back to list of sheets
Back to top of page

There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
14 19first strand
Strand 2
E
45 48parallel
Strand 3
E
74 79parallel
Strand 4
E
102 106parallel
Strand 5
E
143 148parallel
Strand 6
E
176 181parallel
Strand 7
E
204 208parallel
Strand 8
E
268 272parallel
Strand 9
E
14 19parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
227 229first strand
Strand 2
F
227 229anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
204 205first strand
Strand 2
F
176 179parallel
Strand 3
F
143 148parallel
Strand 4
F
102 105parallel
Strand 5
F
74 78parallel
Strand 6
F
45 48parallel
Strand 7
F
14 19parallel
Strand 8
F
268 272parallel
Strand 9
F
207 208parallel
Back to list of sheets
Back to top of page

There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
14 19first strand
Strand 2
G
45 48parallel
Strand 3
G
74 79parallel
Strand 4
G
102 106parallel
Strand 5
G
143 148parallel
Strand 6
G
176 181parallel
Strand 7
G
204 208parallel
Strand 8
G
268 272parallel
Strand 9
G
14 19parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
227 229first strand
Strand 2
H
227 229anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
14 19first strand
Strand 2
H
45 48parallel
Strand 3
H
74 78parallel
Strand 4
H
102 105parallel
Strand 5
H
143 148parallel
Strand 6
H
176 181parallel
Strand 7
H
204 208parallel
Strand 8
H
268 272parallel
Strand 9
H
14 19parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il