Analysis of interatomic Contacts of Structural Units in PDB entry:
3AQ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AQ1 entry

There is 1 chain in PDB entry 3AQ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 81ILE 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3AQ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
82 104Right-handed alpha
Helix 2
2
B
108 131Right-handed alpha
Helix 3
3
B
138 148Right-handed alpha
Helix 4
4
B
158 171Right-handed alpha
Helix 5
5
B
184 188Right-handed alpha
Helix 6
6
B
198 202Right-handed 310
Helix 7
7
B
263 274Right-handed alpha
Helix 8
8
B
287 297Right-handed alpha
Helix 9
9
B
306 318Right-handed alpha
Helix 10
10
B
369 394Right-handed alpha
Helix 11
11
B
401 417Right-handed alpha
Helix 12
12
B
420 433Right-handed alpha
Helix 13
13
B
434 444Right-handed alpha
Helix 14
14
B
447 461Right-handed alpha
Helix 15
15
B
487 506Right-handed alpha
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There are 5 sheets in PDB entry 3AQ1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
395 398anti-parallel
Strand 3
B
484 486anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
182 183anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 195first strand
Strand 2
B
361 367parallel
Strand 3
B
203 205anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 210first strand
Strand 2
B
348 355anti-parallel
Strand 3
B
334 343anti-parallel
Strand 4
B
222 231anti-parallel
Strand 5
B
279 282parallel
Strand 6
B
300 302parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
466 468first strand
Strand 2
B
475 477anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il