Analysis of interatomic Contacts of Structural Units in PDB entry:
3AQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AQJ entry

There are 6 chains in PDB entry 3AQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 18LEU 134
B
 ASP 21LEU 134
C
 VAL 18LEU 134
P
 ASP 21LEU 134
Q
 SER 19LEU 134
R
 VAL 18LEU 134
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 3AQJ

There are 11 sheets in PDB entry 3AQJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
32 36anti-parallel
Strand 3
B
41 61anti-parallel
Strand 4
C
64 68parallel
Strand 5
A
72 76parallel
Strand 6
B
79 93parallel
Strand 7
C
97 100parallel
Strand 8
A
103 106parallel
Strand 9
B
110 112parallel
Strand 10
B
115 116anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
32 36anti-parallel
Strand 3
B
41 61anti-parallel
Strand 4
A
41 61parallel
Strand 5
C
41 61parallel
Strand 6
C
32 36anti-parallel
Strand 7
C
23 26anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
110 112anti-parallel
Strand 3
C
103 106parallel
Strand 4
B
97 100parallel
Strand 5
A
79 93parallel
Strand 6
C
79 93parallel
Strand 7
A
97 100parallel
Strand 8
B
103 106parallel
Strand 9
C
110 112parallel
Strand 10
C
115 116anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
110 112anti-parallel
Strand 3
A
103 106parallel
Strand 4
C
97 100parallel
Strand 5
B
79 93parallel
Strand 6
C
79 93parallel
Strand 7
A
97 100parallel
Strand 8
B
103 106parallel
Strand 9
C
110 112parallel
Strand 10
C
115 116anti-parallel
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There are 12 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 26first strand
Strand 2
C
32 36anti-parallel
Strand 3
C
41 61anti-parallel
Strand 4
A
64 68parallel
Strand 5
B
72 76parallel
Strand 6
C
79 93parallel
Strand 7
A
79 93parallel
Strand 8
C
72 76parallel
Strand 9
B
64 68parallel
Strand 10
A
41 61parallel
Strand 11
A
32 36anti-parallel
Strand 12
A
23 26anti-parallel
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There are 12 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
110 112anti-parallel
Strand 3
C
103 106parallel
Strand 4
B
97 100parallel
Strand 5
A
79 93parallel
Strand 6
B
79 93parallel
Strand 7
A
72 76parallel
Strand 8
C
64 68parallel
Strand 9
B
41 61parallel
Strand 10
C
41 61parallel
Strand 11
C
32 36anti-parallel
Strand 12
C
23 26anti-parallel
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There are 11 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
23 26first strand
Strand 2
R
32 36anti-parallel
Strand 3
R
41 61anti-parallel
Strand 4
P
64 68parallel
Strand 5
Q
72 76parallel
Strand 6
R
79 93parallel
Strand 7
P
79 100parallel
Strand 8
Q
97 100parallel
Strand 9
R
103 106parallel
Strand 10
P
110 112parallel
Strand 11
P
115 116anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
23 26first strand
Strand 2
P
32 36anti-parallel
Strand 3
P
41 61anti-parallel
Strand 4
Q
64 68parallel
Strand 5
R
72 76parallel
Strand 6
P
79 100parallel
Strand 7
Q
103 106parallel
Strand 8
R
110 112parallel
Strand 9
R
115 116anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
23 26first strand
Strand 2
P
32 36anti-parallel
Strand 3
P
41 61anti-parallel
Strand 4
R
41 61parallel
Strand 5
R
32 36anti-parallel
Strand 6
R
23 26anti-parallel
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There are 10 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
23 26first strand
Strand 2
Q
32 36anti-parallel
Strand 3
Q
41 61anti-parallel
Strand 4
R
64 68parallel
Strand 5
P
72 76parallel
Strand 6
Q
79 93parallel
Strand 7
R
97 100parallel
Strand 8
P
103 106parallel
Strand 9
Q
110 112parallel
Strand 10
Q
115 116anti-parallel
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There are 14 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
23 26first strand
Strand 2
P
32 36anti-parallel
Strand 3
P
41 61anti-parallel
Strand 4
Q
41 61parallel
Strand 5
R
41 61parallel
Strand 6
P
64 68parallel
Strand 7
Q
72 76parallel
Strand 8
R
79 93parallel
Strand 9
Q
79 93parallel
Strand 10
P
79 100parallel
Strand 11
Q
97 100parallel
Strand 12
R
103 106parallel
Strand 13
P
110 112parallel
Strand 14
P
115 116anti-parallel
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