Analysis of interatomic Contacts of Structural Units in PDB entry:
3AQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AQM entry

There are 2 chains in PDB entry 3AQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 17LEU 427
B
 GLN 17LEU 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 3AQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 34Right-handed 310
Helix 2
2
A
37 46Right-handed alpha
Helix 3
3
A
55 64Right-handed alpha
Helix 4
4
A
79 84Right-handed alpha
Helix 5
5
A
142 150Right-handed alpha
Helix 6
6
A
153 157Right-handed 310
Helix 7
7
A
171 179Right-handed alpha
Helix 8
8
A
186 194Right-handed alpha
Helix 9
9
A
196 208Right-handed alpha
Helix 10
10
A
213 218Right-handed alpha
Helix 11
11
A
218 224Right-handed alpha
Helix 12
12
A
225 230Right-handed 310
Helix 13
13
A
231 244Right-handed alpha
Helix 14
14
A
247 257Right-handed alpha
Helix 15
15
A
260 265Right-handed alpha
Helix 16
16
A
265 270Right-handed alpha
Helix 17
17
A
278 297Right-handed alpha
Helix 18
18
A
302 311Right-handed alpha
Helix 19
19
A
311 325Right-handed alpha
Helix 20
20
A
329 349Right-handed alpha
Helix 21
21
A
352 369Right-handed alpha
Helix 22
22
A
377 382Right-handed alpha
Helix 23
23
A
385 400Right-handed alpha
Helix 24
24
A
404 418Right-handed alpha
Helix 25
25
A
419 427Right-handed alpha
Helix 26
26
B
30 34Right-handed 310
Helix 27
27
B
37 46Right-handed alpha
Helix 28
28
B
55 64Right-handed alpha
Helix 29
29
B
79 84Right-handed alpha
Helix 30
30
B
142 149Right-handed alpha
Helix 31
31
B
153 156Right-handed 310
Helix 32
32
B
172 179Right-handed alpha
Helix 33
33
B
186 194Right-handed alpha
Helix 34
34
B
195 208Right-handed alpha
Helix 35
35
B
213 218Right-handed alpha
Helix 36
36
B
218 224Right-handed alpha
Helix 37
37
B
225 230Right-handed 310
Helix 38
38
B
231 241Right-handed alpha
Helix 39
39
B
242 246Right-handed 310
Helix 40
40
B
247 257Right-handed alpha
Helix 41
41
B
260 265Right-handed alpha
Helix 42
42
B
265 270Right-handed alpha
Helix 43
43
B
279 297Right-handed alpha
Helix 44
44
B
302 311Right-handed alpha
Helix 45
45
B
311 325Right-handed alpha
Helix 46
46
B
329 349Right-handed alpha
Helix 47
47
B
352 369Right-handed alpha
Helix 48
48
B
376 382Right-handed alpha
Helix 49
49
B
385 401Right-handed alpha
Helix 50
50
B
405 416Right-handed alpha
Helix 51
51
B
419 426Right-handed alpha
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There are 5 sheets in PDB entry 3AQM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
166 167anti-parallel
Strand 3
A
158 159anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
71 74anti-parallel
Strand 3
A
106 111parallel
Strand 4
A
97 101anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
A
211 212parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 22first strand
Strand 2
B
165 167anti-parallel
Strand 3
B
158 160anti-parallel
Strand 4
B
52 54anti-parallel
Strand 5
B
71 74anti-parallel
Strand 6
B
106 111parallel
Strand 7
B
98 101anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 181first strand
Strand 2
B
211 212parallel
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