Analysis of interatomic Contacts of Structural Units in PDB entry:
3ASJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3ASJ entry

There are 4 chains in PDB entry 3ASJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LEU 334
B	ALA 2	LEU 334
C	ALA 2	LEU 334
D	ALA 2	LEU 334

There are 63 helices in PDB entry 3ASJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	13	28	Right-handed alpha
Helix 2	2	A	40	46	Right-handed alpha
Helix 3	3	A	52	61	Right-handed alpha
Helix 4	4	A	82	91	Right-handed alpha
Helix 5	5	A	122	127	Right-handed 310
Helix 6	6	A	144	160	Right-handed alpha
Helix 7	7	A	178	190	Right-handed alpha
Helix 8	8	A	191	193	Right-handed 310
Helix 9	9	A	203	213	Right-handed alpha
Helix 10	10	A	214	217	Right-handed 310
Helix 11	11	A	223	237	Right-handed alpha
Helix 12	12	A	238	239	Right-handed 310
Helix 13	13	A	240	244	Right-handed 310
Helix 14	14	A	274	289	Right-handed alpha
Helix 15	15	A	290	308	Right-handed alpha
Helix 16	16	A	311	315	Right-handed 310
Helix 17	17	A	319	332	Right-handed alpha
Helix 18	18	B	13	27	Right-handed alpha
Helix 19	19	B	40	48	Right-handed alpha
Helix 20	20	B	52	61	Right-handed alpha
Helix 21	21	B	82	91	Right-handed alpha
Helix 22	22	B	122	127	Right-handed 310
Helix 23	23	B	144	160	Right-handed alpha
Helix 24	24	B	177	190	Right-handed alpha
Helix 25	25	B	191	193	Right-handed 310
Helix 26	26	B	203	213	Right-handed alpha
Helix 27	27	B	214	217	Right-handed 310
Helix 28	28	B	223	237	Right-handed alpha
Helix 29	29	B	238	239	Right-handed 310
Helix 30	30	B	240	243	Right-handed 310
Helix 31	31	B	274	289	Right-handed alpha
Helix 32	32	B	290	307	Right-handed alpha
Helix 33	33	B	311	315	Right-handed 310
Helix 34	34	B	319	333	Right-handed alpha
Helix 35	35	C	13	28	Right-handed alpha
Helix 36	36	C	40	48	Right-handed alpha
Helix 37	37	C	52	61	Right-handed alpha
Helix 38	38	C	82	91	Right-handed alpha
Helix 39	39	C	122	127	Right-handed 310
Helix 40	40	C	144	160	Right-handed alpha
Helix 41	41	C	177	191	Right-handed alpha
Helix 42	42	C	203	213	Right-handed alpha
Helix 43	43	C	214	217	Right-handed 310
Helix 44	44	C	223	238	Right-handed alpha
Helix 45	45	C	274	288	Right-handed alpha
Helix 46	46	C	290	308	Right-handed alpha
Helix 47	47	C	311	315	Right-handed 310
Helix 48	48	C	319	334	Right-handed alpha
Helix 49	49	D	13	27	Right-handed alpha
Helix 50	50	D	40	48	Right-handed alpha
Helix 51	51	D	52	61	Right-handed alpha
Helix 52	52	D	82	91	Right-handed alpha
Helix 53	53	D	122	127	Right-handed 310
Helix 54	54	D	144	160	Right-handed alpha
Helix 55	55	D	178	191	Right-handed alpha
Helix 56	56	D	203	213	Right-handed alpha
Helix 57	57	D	214	217	Right-handed 310
Helix 58	58	D	223	238	Right-handed alpha
Helix 59	59	D	239	244	Right-handed 310
Helix 60	60	D	274	288	Right-handed alpha
Helix 61	61	D	290	307	Right-handed alpha
Helix 62	62	D	311	315	Right-handed 310
Helix 63	63	D	319	333	Right-handed alpha

There are 6 sheets in PDB entry 3ASJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	37	first strand
Strand 2	A	3	10	parallel
Strand 3	A	64	69	parallel
Strand 4	A	254	256	parallel
Strand 5	A	247	249	anti-parallel
Strand 6	A	95	101	anti-parallel
Strand 7	A	113	119	anti-parallel
Strand 8	A	219	222	parallel
Strand 9	A	165	170	parallel
Strand 10	A	197	202	parallel

Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	135	143	anti-parallel
Strand 3	B	135	143	anti-parallel
Strand 4	B	129	132	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	37	first strand
Strand 2	B	3	10	parallel
Strand 3	B	64	69	parallel
Strand 4	B	254	258	parallel
Strand 5	B	245	249	anti-parallel
Strand 6	B	95	101	anti-parallel
Strand 7	B	113	119	anti-parallel
Strand 8	B	219	222	parallel
Strand 9	B	165	170	parallel
Strand 10	B	197	202	parallel

Back to list of sheets
Back to top of page

There are 10 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	37	first strand
Strand 2	C	3	8	parallel
Strand 3	C	64	67	parallel
Strand 4	C	254	258	parallel
Strand 5	C	245	249	anti-parallel
Strand 6	C	95	101	anti-parallel
Strand 7	C	113	119	anti-parallel
Strand 8	C	219	222	parallel
Strand 9	C	165	170	parallel
Strand 10	C	197	202	parallel

Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	132	first strand
Strand 2	C	135	143	anti-parallel
Strand 3	D	135	143	anti-parallel
Strand 4	D	129	132	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	37	first strand
Strand 2	D	3	10	parallel
Strand 3	D	64	69	parallel
Strand 4	D	254	256	parallel
Strand 5	D	247	249	anti-parallel
Strand 6	D	95	101	anti-parallel
Strand 7	D	113	119	anti-parallel
Strand 8	D	219	222	parallel
Strand 9	D	165	170	parallel
Strand 10	D	197	202	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3ASJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3ASJ