Analysis of interatomic Contacts of Structural Units in PDB entry:
3ASQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ASQ entry

There are 2 chains in PDB entry 3ASQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 224ALA 534
B
 ARG 230VAL 531
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3ASQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
224 229Right-handed alpha
Helix 2
2
A
238 242Right-handed 310
Helix 3
3
A
284 288Right-handed 310
Helix 4
4
A
361 364Right-handed 310
Helix 5
5
A
453 464Right-handed alpha
Helix 6
6
A
506 510Right-handed 310
Helix 7
7
B
238 242Right-handed 310
Helix 8
8
B
361 364Right-handed 310
Helix 9
9
B
453 464Right-handed alpha
Helix 10
10
B
506 510Right-handed 310
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There are 6 sheets in PDB entry 3ASQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 255first strand
Strand 2
A
431 436anti-parallel
Strand 3
A
446 450anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 354first strand
Strand 2
A
330 337anti-parallel
Strand 3
A
378 388anti-parallel
Strand 4
A
291 295anti-parallel
Strand 5
A
301 305anti-parallel
Strand 6
A
366 368anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
A
495 498anti-parallel
Strand 3
A
484 491anti-parallel
Strand 4
A
471 477anti-parallel
Strand 5
A
515 522anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 255first strand
Strand 2
B
428 436anti-parallel
Strand 3
B
446 450anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 255first strand
Strand 2
B
428 436anti-parallel
Strand 3
B
495 498anti-parallel
Strand 4
B
484 491anti-parallel
Strand 5
B
471 477anti-parallel
Strand 6
B
515 522anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 353first strand
Strand 2
B
330 337anti-parallel
Strand 3
B
378 388anti-parallel
Strand 4
B
291 295anti-parallel
Strand 5
B
301 304anti-parallel
Strand 6
B
366 368anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il