Analysis of interatomic Contacts of Structural Units in PDB entry:
3ATG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ATG entry

There is 1 chain in PDB entry 3ATG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1SER 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 3ATG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
143 147Right-handed 310
Helix 2
2
A
159 163Right-handed 310
Helix 3
3
A
191 193Right-handed 310
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There are 3 sheets in PDB entry 3ATG. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
228 238anti-parallel
Strand 3
A
56 62anti-parallel
Strand 4
A
48 50anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
68 70parallel
Strand 3
A
56 62anti-parallel
Strand 4
A
228 238anti-parallel
Strand 5
A
84 91anti-parallel
Strand 6
A
165 172anti-parallel
Strand 7
A
175 180anti-parallel
Strand 8
A
183 189anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
72 74anti-parallel
Strand 3
A
204 212anti-parallel
Strand 4
A
98 106anti-parallel
Strand 5
A
119 124anti-parallel
Strand 6
A
132 138anti-parallel
Strand 7
A
148 153anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il