Analysis of interatomic Contacts of Structural Units in PDB entry:
3AUV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3AUV entry

There are 6 chains in PDB entry 3AUV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 12	SER 253
B	GLY 11	VAL 252
C	GLY 11	VAL 252
D	GLY 11	SER 253
E	GLY 11	VAL 252
F	GLY 11	ALA 213

There are 29 helices in PDB entry 3AUV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	90	94	Right-handed 310
Helix 2	2	A	162	166	Right-handed 310
Helix 3	3	A	187	190	Right-handed 310
Helix 4	4	A	208	210	Right-handed 310
Helix 5	5	A	221	225	Right-handed 310
Helix 6	6	B	90	94	Right-handed 310
Helix 7	7	B	162	166	Right-handed 310
Helix 8	8	B	187	190	Right-handed 310
Helix 9	9	B	208	210	Right-handed 310
Helix 10	10	B	221	225	Right-handed 310
Helix 11	11	C	90	94	Right-handed 310
Helix 12	12	C	162	166	Right-handed 310
Helix 13	13	C	187	190	Right-handed 310
Helix 14	14	C	221	225	Right-handed 310
Helix 15	15	D	90	94	Right-handed 310
Helix 16	16	D	162	166	Right-handed 310
Helix 17	17	D	187	190	Right-handed 310
Helix 18	18	D	208	210	Right-handed 310
Helix 19	19	D	221	225	Right-handed 310
Helix 20	20	E	90	94	Right-handed 310
Helix 21	21	E	162	166	Right-handed 310
Helix 22	22	E	187	190	Right-handed 310
Helix 23	23	E	208	210	Right-handed 310
Helix 24	24	E	221	225	Right-handed 310
Helix 25	25	F	90	94	Right-handed 310
Helix 26	26	F	162	166	Right-handed 310
Helix 27	27	F	187	190	Right-handed 310
Helix 28	28	F	208	210	Right-handed 310
Helix 29	29	F	221	225	Right-handed 310

There are 25 sheets in PDB entry 3AUV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	30	36	anti-parallel
Strand 3	A	81	86	anti-parallel
Strand 4	A	73	78	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	23	first strand
Strand 2	A	113	116	parallel
Strand 3	A	95	101	anti-parallel
Strand 4	A	44	49	anti-parallel
Strand 5	A	56	60	anti-parallel
Strand 6	A	64	65	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	141	first strand
Strand 2	A	152	159	anti-parallel
Strand 3	A	212	217	anti-parallel
Strand 4	A	202	207	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	248	252	parallel
Strand 3	A	226	233	anti-parallel
Strand 4	A	167	173	anti-parallel
Strand 5	A	179	185	anti-parallel
Strand 6	A	192	194	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	30	36	anti-parallel
Strand 3	B	81	86	anti-parallel
Strand 4	B	73	78	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	23	first strand
Strand 2	B	113	116	parallel
Strand 3	B	95	101	anti-parallel
Strand 4	B	44	49	anti-parallel
Strand 5	B	56	60	anti-parallel
Strand 6	B	64	65	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	141	first strand
Strand 2	B	152	159	anti-parallel
Strand 3	B	212	217	anti-parallel
Strand 4	B	202	207	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	179	185	anti-parallel
Strand 3	B	167	173	anti-parallel
Strand 4	B	226	233	anti-parallel
Strand 5	B	248	250	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	18	first strand
Strand 2	C	30	36	anti-parallel
Strand 3	C	81	86	anti-parallel
Strand 4	C	73	78	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	23	first strand
Strand 2	C	113	116	parallel
Strand 3	C	95	101	anti-parallel
Strand 4	C	44	49	anti-parallel
Strand 5	C	56	60	anti-parallel
Strand 6	C	64	65	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	141	first strand
Strand 2	C	152	159	anti-parallel
Strand 3	C	212	217	anti-parallel
Strand 4	C	202	207	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	248	251	parallel
Strand 3	C	226	233	anti-parallel
Strand 4	C	167	173	anti-parallel
Strand 5	C	179	185	anti-parallel
Strand 6	C	192	194	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	18	first strand
Strand 2	D	30	36	anti-parallel
Strand 3	D	81	86	anti-parallel
Strand 4	D	73	78	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	24	first strand
Strand 2	D	113	117	parallel
Strand 3	D	95	101	anti-parallel
Strand 4	D	44	49	anti-parallel
Strand 5	D	56	60	anti-parallel
Strand 6	D	64	65	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	152	159	anti-parallel
Strand 3	D	212	217	anti-parallel
Strand 4	D	202	207	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	248	252	parallel
Strand 3	D	226	233	anti-parallel
Strand 4	D	167	173	anti-parallel
Strand 5	D	179	185	anti-parallel
Strand 6	D	192	194	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	248	252	parallel
Strand 3	D	226	233	anti-parallel
Strand 4	D	243	244	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	18	first strand
Strand 2	E	30	36	anti-parallel
Strand 3	E	81	86	anti-parallel
Strand 4	E	73	78	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	23	first strand
Strand 2	E	113	116	parallel
Strand 3	E	95	101	anti-parallel
Strand 4	E	44	49	anti-parallel
Strand 5	E	56	60	anti-parallel
Strand 6	E	64	65	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	141	first strand
Strand 2	E	152	159	anti-parallel
Strand 3	E	212	217	anti-parallel
Strand 4	E	202	207	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	194	first strand
Strand 2	E	179	185	anti-parallel
Strand 3	E	167	173	anti-parallel
Strand 4	E	226	233	anti-parallel
Strand 5	E	248	250	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	18	first strand
Strand 2	F	30	36	anti-parallel
Strand 3	F	81	86	anti-parallel
Strand 4	F	73	78	anti-parallel

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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	23	first strand
Strand 2	F	113	116	parallel
Strand 3	F	95	101	anti-parallel
Strand 4	F	44	49	anti-parallel
Strand 5	F	56	60	anti-parallel
Strand 6	F	64	65	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	141	first strand
Strand 2	F	152	159	anti-parallel
Strand 3	F	212	217	anti-parallel
Strand 4	F	202	207	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	145	first strand
Strand 2	F	248	251	parallel
Strand 3	F	226	233	anti-parallel
Strand 4	F	167	173	anti-parallel
Strand 5	F	179	185	anti-parallel
Strand 6	F	192	194	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3AUV

Analysis of interatomic Contacts of Structural Units in PDB entry:
3AUV