Analysis of interatomic Contacts of Structural Units in PDB entry:
3AV0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AV0 entry

There are 2 chains in PDB entry 3AV0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2GLY 366
B
 MET 1GLY 1005
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3AV0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 17Right-handed 310
Helix 2
2
A
18 38Right-handed alpha
Helix 3
3
A
57 74Right-handed alpha
Helix 4
4
A
83 87Right-handed 310
Helix 5
5
A
95 101Right-handed 310
Helix 6
6
A
132 149Right-handed alpha
Helix 7
7
A
172 176Right-handed 310
Helix 8
8
A
210 213Right-handed 310
Helix 9
9
A
214 221Right-handed alpha
Helix 10
10
A
235 237Right-handed 310
Helix 11
11
A
256 268Right-handed alpha
Helix 12
12
A
283 285Right-handed 310
Helix 13
13
A
288 292Right-handed 310
Helix 14
14
A
320 333Right-handed alpha
Helix 15
15
A
335 348Right-handed alpha
Helix 16
16
A
351 363Right-handed alpha
Helix 17
17
B
39 51Right-handed alpha
Helix 18
18
B
107 116Right-handed alpha
Helix 19
19
B
138 143Right-handed 310
Helix 20
20
B
144 156Right-handed alpha
Helix 21
21
B
157 186Right-handed alpha
Helix 22
22
B
835 856Right-handed alpha
Helix 23
23
B
857 859Right-handed 310
Helix 24
24
B
862 870Right-handed alpha
Helix 25
25
B
871 884Right-handed alpha
Helix 26
26
B
885 887Right-handed 310
Helix 27
27
B
916 935Right-handed alpha
Helix 28
28
B
953 967Right-handed alpha
Helix 29
29
B
979 984Right-handed alpha
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There are 7 sheets in PDB entry 3AV0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
77 80parallel
Strand 3
A
43 46parallel
Strand 4
A
2 6parallel
Strand 5
A
223 228anti-parallel
Strand 6
A
239 243anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 115first strand
Strand 2
A
118 125anti-parallel
Strand 3
A
153 157parallel
Strand 4
A
181 184parallel
Strand 5
A
199 202parallel
Strand 6
A
191 194anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 254first strand
Strand 2
A
275 281parallel
Strand 3
A
297 303parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 22first strand
Strand 2
B
3 13anti-parallel
Strand 3
B
70 77anti-parallel
Strand 4
B
82 86anti-parallel
Strand 5
B
95 99anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 30first strand
Strand 2
B
972 976parallel
Strand 3
B
943 946parallel
Strand 4
B
131 132parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
893 895first strand
Strand 2
B
901 905anti-parallel
Strand 3
B
908 911anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
992 995first strand
Strand 2
B
998 1001anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il