Analysis of interatomic Contacts of Structural Units in PDB entry:
3AV4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AV4 entry

There is 1 chain in PDB entry 3AV4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 357ALA 1612
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3AV4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
383 388Right-handed alpha
Helix 2
2
A
501 525Right-handed alpha
Helix 3
3
A
529 540Right-handed alpha
Helix 4
4
A
552 559Right-handed alpha
Helix 5
5
A
559 574Right-handed alpha
Helix 6
6
A
580 583Right-handed 310
Helix 7
7
A
584 594Right-handed alpha
Helix 8
8
A
624 636Right-handed alpha
Helix 9
9
A
694 705Right-handed alpha
Helix 10
10
A
804 806Right-handed 310
Helix 11
11
A
808 812Right-handed 310
Helix 12
12
A
889 893Right-handed 310
Helix 13
13
A
897 911Right-handed alpha
Helix 14
14
A
975 981Right-handed 310
Helix 15
15
A
1032 1036Right-handed 310
Helix 16
16
A
1057 1059Right-handed 310
Helix 17
17
A
1074 1081Right-handed alpha
Helix 18
18
A
1103 1107Right-handed 310
Helix 19
19
A
1152 1161Right-handed alpha
Helix 20
20
A
1173 1184Right-handed alpha
Helix 21
21
A
1193 1202Right-handed alpha
Helix 22
22
A
1239 1249Right-handed alpha
Helix 23
23
A
1249 1262Right-handed alpha
Helix 24
24
A
1273 1276Right-handed 310
Helix 25
25
A
1280 1294Right-handed alpha
Helix 26
26
A
1305 1308Right-handed 310
Helix 27
27
A
1338 1342Right-handed 310
Helix 28
28
A
1369 1375Right-handed alpha
Helix 29
29
A
1397 1405Right-handed alpha
Helix 30
30
A
1421 1431Right-handed alpha
Helix 31
31
A
1438 1442Right-handed 310
Helix 32
32
A
1479 1484Right-handed 310
Helix 33
33
A
1500 1506Right-handed alpha
Helix 34
34
A
1507 1513Right-handed 310
Helix 35
35
A
1551 1559Right-handed alpha
Helix 36
36
A
1570 1581Right-handed alpha
Helix 37
37
A
1583 1610Right-handed alpha
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There are 12 sheets in PDB entry 3AV4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 382first strand
Strand 2
A
459 464parallel
Strand 3
A
440 445anti-parallel
Strand 4
A
410 419anti-parallel
Strand 5
A
491 494parallel
Strand 6
A
482 486anti-parallel
Strand 7
A
469 473anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
734 737first strand
Strand 2
A
753 756anti-parallel
Strand 3
A
759 761anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 750first strand
Strand 2
A
778 788anti-parallel
Strand 3
A
793 802anti-parallel
Strand 4
A
816 827anti-parallel
Strand 5
A
867 874parallel
Strand 6
A
837 839parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
831 835first strand
Strand 2
A
765 768anti-parallel
Strand 3
A
778 788anti-parallel
Strand 4
A
793 802anti-parallel
Strand 5
A
816 827anti-parallel
Strand 6
A
867 874parallel
Strand 7
A
879 881anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
913 920first strand
Strand 2
A
925 932anti-parallel
Strand 3
A
935 938anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1046 1055first strand
Strand 2
A
1018 1025anti-parallel
Strand 3
A
996 1002anti-parallel
Strand 4
A
942 945anti-parallel
Strand 5
A
1061 1067anti-parallel
Strand 6
A
1085 1088parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1007 1008first strand
Strand 2
A
1011 1012anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1091 1093first strand
Strand 2
A
1098 1100anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1188 1190first strand
Strand 2
A
1164 1170parallel
Strand 3
A
1142 1147parallel
Strand 4
A
1222 1225parallel
Strand 5
A
1265 1271parallel
Strand 6
A
1314 1321anti-parallel
Strand 7
A
1296 1303anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1346 1348first strand
Strand 2
A
1351 1353anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1388 1390first strand
Strand 2
A
1411 1413anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1447 1448first strand
Strand 2
A
1454 1455anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il