Analysis of interatomic Contacts of Structural Units in PDB entry:
3AV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AV5 entry

There is 1 chain in PDB entry 3AV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 357ALA 1608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3AV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
383 387Right-handed alpha
Helix 2
2
A
501 525Right-handed alpha
Helix 3
3
A
529 540Right-handed alpha
Helix 4
4
A
552 573Right-handed alpha
Helix 5
5
A
580 583Right-handed 310
Helix 6
6
A
584 594Right-handed alpha
Helix 7
7
A
624 636Right-handed alpha
Helix 8
8
A
694 705Right-handed alpha
Helix 9
9
A
804 806Right-handed 310
Helix 10
10
A
808 812Right-handed 310
Helix 11
11
A
829 831Right-handed 310
Helix 12
12
A
897 910Right-handed alpha
Helix 13
13
A
975 981Right-handed 310
Helix 14
14
A
1014 1016Right-handed 310
Helix 15
15
A
1026 1030Right-handed 310
Helix 16
16
A
1032 1036Right-handed 310
Helix 17
17
A
1069 1071Right-handed 310
Helix 18
18
A
1074 1080Right-handed alpha
Helix 19
19
A
1103 1107Right-handed 310
Helix 20
20
A
1152 1161Right-handed alpha
Helix 21
21
A
1173 1184Right-handed alpha
Helix 22
22
A
1193 1204Right-handed alpha
Helix 23
23
A
1239 1248Right-handed alpha
Helix 24
24
A
1249 1262Right-handed alpha
Helix 25
25
A
1273 1276Right-handed 310
Helix 26
26
A
1280 1294Right-handed alpha
Helix 27
27
A
1305 1308Right-handed 310
Helix 28
28
A
1338 1343Right-handed 310
Helix 29
29
A
1369 1375Right-handed alpha
Helix 30
30
A
1397 1405Right-handed alpha
Helix 31
31
A
1421 1430Right-handed alpha
Helix 32
32
A
1438 1442Right-handed 310
Helix 33
33
A
1479 1483Right-handed 310
Helix 34
34
A
1500 1507Right-handed alpha
Helix 35
35
A
1508 1510Right-handed 310
Helix 36
36
A
1551 1559Right-handed alpha
Helix 37
37
A
1570 1581Right-handed alpha
Helix 38
38
A
1583 1605Right-handed alpha
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There are 11 sheets in PDB entry 3AV5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 382first strand
Strand 2
A
459 464parallel
Strand 3
A
440 446anti-parallel
Strand 4
A
411 419anti-parallel
Strand 5
A
491 494parallel
Strand 6
A
482 487anti-parallel
Strand 7
A
467 473anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
734 737first strand
Strand 2
A
753 756anti-parallel
Strand 3
A
759 761anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 751first strand
Strand 2
A
778 788anti-parallel
Strand 3
A
793 802anti-parallel
Strand 4
A
816 827anti-parallel
Strand 5
A
868 874parallel
Strand 6
A
838 839parallel
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There are 14 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
833 835first strand
Strand 2
A
765 768anti-parallel
Strand 3
A
778 788anti-parallel
Strand 4
A
793 802anti-parallel
Strand 5
A
816 827anti-parallel
Strand 6
A
868 874parallel
Strand 7
A
879 881anti-parallel
Strand 8
A
1296 1303anti-parallel
Strand 9
A
1314 1321anti-parallel
Strand 10
A
1265 1271anti-parallel
Strand 11
A
1222 1225parallel
Strand 12
A
1142 1147parallel
Strand 13
A
1164 1170parallel
Strand 14
A
1188 1190parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
913 917first strand
Strand 2
A
927 932anti-parallel
Strand 3
A
935 938anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1044 1047first strand
Strand 2
A
1085 1093parallel
Strand 3
A
1061 1067parallel
Strand 4
A
942 945anti-parallel
Strand 5
A
996 1002anti-parallel
Strand 6
A
1018 1024anti-parallel
Strand 7
A
1051 1055anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1044 1047first strand
Strand 2
A
1085 1093parallel
Strand 3
A
1098 1100anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1006 1008first strand
Strand 2
A
1011 1013anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1346 1348first strand
Strand 2
A
1351 1353anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1388 1390first strand
Strand 2
A
1411 1413anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1447 1448first strand
Strand 2
A
1454 1455anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il