Analysis of interatomic Contacts of Structural Units in PDB entry:
3AV7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AV7 entry

There are 2 chains in PDB entry 3AV7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 25ALA 428
C
 SER 25ALA 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3AV7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 34Right-handed 310
Helix 2
2
A
35 40Right-handed alpha
Helix 3
3
A
44 55Right-handed alpha
Helix 4
4
A
67 71Right-handed 310
Helix 5
5
A
72 87Right-handed alpha
Helix 6
6
A
87 93Right-handed alpha
Helix 7
7
A
100 116Right-handed alpha
Helix 8
8
A
127 141Right-handed alpha
Helix 9
9
A
154 163Right-handed alpha
Helix 10
10
A
179 193Right-handed alpha
Helix 11
11
A
215 229Right-handed alpha
Helix 12
12
A
251 256Right-handed 310
Helix 13
13
A
272 276Right-handed 310
Helix 14
14
A
283 299Right-handed alpha
Helix 15
15
A
302 315Right-handed alpha
Helix 16
16
A
316 344Right-handed alpha
Helix 17
17
A
368 379Right-handed alpha
Helix 18
18
A
387 390Right-handed 310
Helix 19
19
A
407 426Right-handed alpha
Helix 20
20
C
29 34Right-handed 310
Helix 21
21
C
35 41Right-handed alpha
Helix 22
22
C
44 56Right-handed alpha
Helix 23
23
C
67 71Right-handed 310
Helix 24
24
C
72 87Right-handed alpha
Helix 25
25
C
87 93Right-handed alpha
Helix 26
26
C
100 116Right-handed alpha
Helix 27
27
C
127 141Right-handed alpha
Helix 28
28
C
154 163Right-handed alpha
Helix 29
29
C
179 192Right-handed alpha
Helix 30
30
C
215 230Right-handed alpha
Helix 31
31
C
252 256Right-handed 310
Helix 32
32
C
272 276Right-handed 310
Helix 33
33
C
283 299Right-handed alpha
Helix 34
34
C
302 315Right-handed alpha
Helix 35
35
C
316 344Right-handed alpha
Helix 36
36
C
368 379Right-handed alpha
Helix 37
37
C
387 390Right-handed 310
Helix 38
38
C
407 427Right-handed alpha
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There are 6 sheets in PDB entry 3AV7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
381 382parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 126first strand
Strand 2
A
278 282anti-parallel
Strand 3
A
261 266anti-parallel
Strand 4
A
232 236parallel
Strand 5
A
197 202parallel
Strand 6
A
146 151parallel
Strand 7
A
167 174parallel
Strand 8
A
177 178anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 350first strand
Strand 2
A
358 362anti-parallel
Strand 3
A
398 402anti-parallel
Strand 4
A
384 385anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 60first strand
Strand 2
C
381 382parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 126first strand
Strand 2
C
278 282anti-parallel
Strand 3
C
261 266anti-parallel
Strand 4
C
232 236parallel
Strand 5
C
199 202parallel
Strand 6
C
146 151parallel
Strand 7
C
167 174parallel
Strand 8
C
177 178anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
349 350first strand
Strand 2
C
358 362anti-parallel
Strand 3
C
398 402anti-parallel
Strand 4
C
384 385anti-parallel
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