Analysis of interatomic Contacts of Structural Units in PDB entry:
3AVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AVT entry

There are 2 chains in PDB entry 3AVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 1264
T
 G 2104 A 2107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 3AVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 23Right-handed 310
Helix 2
2
A
33 43Right-handed alpha
Helix 3
3
A
45 51Right-handed alpha
Helix 4
4
A
80 85Right-handed alpha
Helix 5
5
A
86 102Right-handed alpha
Helix 6
6
A
107 126Right-handed alpha
Helix 7
7
A
162 177Right-handed alpha
Helix 8
8
A
182 186Right-handed 310
Helix 9
9
A
194 204Right-handed alpha
Helix 10
10
A
208 226Right-handed alpha
Helix 11
11
A
227 231Right-handed 310
Helix 12
12
A
242 250Right-handed alpha
Helix 13
13
A
272 281Right-handed alpha
Helix 14
14
A
282 284Right-handed 310
Helix 15
15
A
308 324Right-handed alpha
Helix 16
16
A
368 378Right-handed alpha
Helix 17
17
A
399 410Right-handed alpha
Helix 18
18
A
427 444Right-handed alpha
Helix 19
19
A
459 464Right-handed alpha
Helix 20
20
A
466 483Right-handed alpha
Helix 21
21
A
489 493Right-handed 310
Helix 22
22
A
702 714Right-handed alpha
Helix 23
23
A
722 735Right-handed alpha
Helix 24
24
A
742 747Right-handed alpha
Helix 25
25
A
756 769Right-handed alpha
Helix 26
26
A
783 805Right-handed alpha
Helix 27
27
A
816 834Right-handed alpha
Helix 28
28
A
838 846Right-handed alpha
Helix 29
29
A
857 861Right-handed 310
Helix 30
30
A
862 869Right-handed alpha
Helix 31
31
A
877 888Right-handed alpha
Helix 32
32
A
920 938Right-handed alpha
Helix 33
33
A
939 942Right-handed 310
Helix 34
34
A
947 962Right-handed alpha
Helix 35
35
A
971 975Right-handed 310
Helix 36
36
A
977 985Right-handed alpha
Helix 37
37
A
986 997Right-handed alpha
Helix 38
38
A
1021 1042Right-handed alpha
Helix 39
39
A
1044 1048Right-handed 310
Helix 40
40
A
1061 1073Right-handed alpha
Helix 41
41
A
1077 1081Right-handed 310
Helix 42
42
A
1112 1127Right-handed alpha
Helix 43
43
A
1134 1146Right-handed alpha
Helix 44
44
A
1149 1155Right-handed alpha
Helix 45
45
A
1169 1173Right-handed 310
Helix 46
46
A
1198 1214Right-handed alpha
Helix 47
47
A
1236 1240Right-handed 310
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There are 15 sheets in PDB entry 3AVT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 67first strand
Strand 2
A
70 76anti-parallel
Strand 3
A
134 139anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 147first strand
Strand 2
A
152 159anti-parallel
Strand 3
A
252 260anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
237 241anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
360 365anti-parallel
Strand 3
A
296 303parallel
Strand 4
A
385 391parallel
Strand 5
A
414 420parallel
Strand 6
A
454 456parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 498first strand
Strand 2
A
576 578anti-parallel
Strand 3
A
526 530anti-parallel
Strand 4
A
536 539anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 505first strand
Strand 2
A
509 515anti-parallel
Strand 3
A
558 562anti-parallel
Strand 4
A
542 544anti-parallel
Strand 5
A
549 550anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 522first strand
Strand 2
A
552 554anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 595first strand
Strand 2
A
640 653anti-parallel
Strand 3
A
621 627anti-parallel
Strand 4
A
614 616anti-parallel
Strand 5
A
658 663anti-parallel
Strand 6
A
666 676anti-parallel
Strand 7
A
584 595anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
917 918first strand
Strand 2
A
900 903anti-parallel
Strand 3
A
1000 1002parallel
Strand 4
A
1009 1010anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
906 907first strand
Strand 2
A
913 914anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
964 968first strand
Strand 2
A
1054 1058anti-parallel
Strand 3
A
1049 1051anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1087 1090first strand
Strand 2
A
1093 1096anti-parallel
Strand 3
A
1099 1100anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1128 1129first strand
Strand 2
A
1132 1133anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1157first strand
Strand 2
A
1166 1167parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1177 1179first strand
Strand 2
A
1182 1194anti-parallel
Strand 3
A
1248 1261anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il