Analysis of interatomic Contacts of Structural Units in PDB entry:
3AVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AVU entry

There are 3 chains in PDB entry 3AVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 1264
G
 G 2001 A 2007
T
 G 2104 A 2112
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3AVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 15Right-handed alpha
Helix 2
2
A
19 25Right-handed alpha
Helix 3
3
A
33 43Right-handed alpha
Helix 4
4
A
45 50Right-handed alpha
Helix 5
5
A
51 53Right-handed 310
Helix 6
6
A
80 85Right-handed alpha
Helix 7
7
A
87 102Right-handed alpha
Helix 8
8
A
110 115Right-handed alpha
Helix 9
9
A
115 127Right-handed alpha
Helix 10
10
A
162 177Right-handed alpha
Helix 11
11
A
189 205Right-handed alpha
Helix 12
12
A
208 228Right-handed alpha
Helix 13
13
A
229 231Right-handed 310
Helix 14
14
A
242 250Right-handed alpha
Helix 15
15
A
272 285Right-handed alpha
Helix 16
16
A
308 319Right-handed alpha
Helix 17
17
A
368 378Right-handed alpha
Helix 18
18
A
399 411Right-handed alpha
Helix 19
19
A
427 429Right-handed 310
Helix 20
20
A
430 444Right-handed alpha
Helix 21
21
A
458 464Right-handed alpha
Helix 22
22
A
466 481Right-handed alpha
Helix 23
23
A
489 493Right-handed 310
Helix 24
24
A
597 601Right-handed 310
Helix 25
25
A
702 714Right-handed alpha
Helix 26
26
A
722 735Right-handed alpha
Helix 27
27
A
742 747Right-handed alpha
Helix 28
28
A
756 769Right-handed alpha
Helix 29
29
A
783 804Right-handed alpha
Helix 30
30
A
816 834Right-handed alpha
Helix 31
31
A
838 845Right-handed alpha
Helix 32
32
A
857 861Right-handed 310
Helix 33
33
A
862 869Right-handed alpha
Helix 34
34
A
874 876Right-handed 310
Helix 35
35
A
877 886Right-handed alpha
Helix 36
36
A
920 938Right-handed alpha
Helix 37
37
A
939 941Right-handed 310
Helix 38
38
A
949 962Right-handed alpha
Helix 39
39
A
977 985Right-handed alpha
Helix 40
40
A
986 997Right-handed alpha
Helix 41
41
A
1021 1041Right-handed alpha
Helix 42
42
A
1044 1048Right-handed 310
Helix 43
43
A
1061 1072Right-handed alpha
Helix 44
44
A
1077 1081Right-handed 310
Helix 45
45
A
1112 1128Right-handed alpha
Helix 46
46
A
1134 1146Right-handed alpha
Helix 47
47
A
1149 1154Right-handed alpha
Helix 48
48
A
1198 1215Right-handed alpha
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There are 14 sheets in PDB entry 3AVU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 67first strand
Strand 2
A
70 78anti-parallel
Strand 3
A
131 139anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
152 157anti-parallel
Strand 3
A
147 148anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
152 157anti-parallel
Strand 3
A
255 260anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
237 241anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
360 365anti-parallel
Strand 3
A
296 303parallel
Strand 4
A
385 391parallel
Strand 5
A
415 420parallel
Strand 6
A
454 456parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 504first strand
Strand 2
A
510 515anti-parallel
Strand 3
A
558 563anti-parallel
Strand 4
A
542 544anti-parallel
Strand 5
A
549 550anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 522first strand
Strand 2
A
552 554anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 529first strand
Strand 2
A
536 539anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
614 616first strand
Strand 2
A
658 663anti-parallel
Strand 3
A
666 675anti-parallel
Strand 4
A
585 595anti-parallel
Strand 5
A
640 652anti-parallel
Strand 6
A
624 627anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
914 918first strand
Strand 2
A
900 906anti-parallel
Strand 3
A
1000 1002parallel
Strand 4
A
1008 1010anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
964 968first strand
Strand 2
A
1054 1058anti-parallel
Strand 3
A
1049 1051anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1087 1090first strand
Strand 2
A
1093 1096anti-parallel
Strand 3
A
1099 1100anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1157first strand
Strand 2
A
1166 1167parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1183 1195first strand
Strand 2
A
1247 1261anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il