Analysis of interatomic Contacts of Structural Units in PDB entry:
3AVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AVV entry

There are 3 chains in PDB entry 3AVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 1264
G
 G 2001 U 2008
T
 C 2103 A 2113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 3AVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 8Right-handed 310
Helix 2
2
A
9 17Right-handed alpha
Helix 3
3
A
20 25Right-handed alpha
Helix 4
4
A
35 43Right-handed alpha
Helix 5
5
A
45 51Right-handed alpha
Helix 6
6
A
80 85Right-handed alpha
Helix 7
7
A
87 96Right-handed alpha
Helix 8
8
A
97 102Right-handed alpha
Helix 9
9
A
107 115Right-handed alpha
Helix 10
10
A
119 124Right-handed alpha
Helix 11
11
A
162 174Right-handed alpha
Helix 12
12
A
187 194Right-handed alpha
Helix 13
13
A
199 204Right-handed alpha
Helix 14
14
A
208 226Right-handed alpha
Helix 15
15
A
241 245Right-handed 310
Helix 16
16
A
272 284Right-handed alpha
Helix 17
17
A
314 319Right-handed alpha
Helix 18
18
A
369 379Right-handed alpha
Helix 19
19
A
399 409Right-handed alpha
Helix 20
20
A
427 443Right-handed alpha
Helix 21
21
A
458 465Right-handed alpha
Helix 22
22
A
466 481Right-handed alpha
Helix 23
23
A
597 601Right-handed 310
Helix 24
24
A
705 714Right-handed alpha
Helix 25
25
A
722 735Right-handed alpha
Helix 26
26
A
744 748Right-handed 310
Helix 27
27
A
756 770Right-handed alpha
Helix 28
28
A
783 804Right-handed alpha
Helix 29
29
A
816 833Right-handed alpha
Helix 30
30
A
838 843Right-handed alpha
Helix 31
31
A
857 862Right-handed 310
Helix 32
32
A
863 869Right-handed alpha
Helix 33
33
A
877 886Right-handed alpha
Helix 34
34
A
920 938Right-handed alpha
Helix 35
35
A
949 962Right-handed alpha
Helix 36
36
A
971 976Right-handed alpha
Helix 37
37
A
977 983Right-handed alpha
Helix 38
38
A
988 997Right-handed alpha
Helix 39
39
A
1021 1041Right-handed alpha
Helix 40
40
A
1044 1048Right-handed 310
Helix 41
41
A
1060 1072Right-handed alpha
Helix 42
42
A
1077 1081Right-handed 310
Helix 43
43
A
1112 1127Right-handed alpha
Helix 44
44
A
1134 1146Right-handed alpha
Helix 45
45
A
1149 1154Right-handed alpha
Helix 46
46
A
1198 1215Right-handed alpha
Helix 47
47
A
1236 1240Right-handed 310
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There are 15 sheets in PDB entry 3AVV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
70 77anti-parallel
Strand 3
A
131 134anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
70 77anti-parallel
Strand 3
A
137 139anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 147first strand
Strand 2
A
152 158anti-parallel
Strand 3
A
255 260anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
360 366anti-parallel
Strand 3
A
296 303parallel
Strand 4
A
385 391parallel
Strand 5
A
414 420parallel
Strand 6
A
454 457parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 505first strand
Strand 2
A
509 515anti-parallel
Strand 3
A
558 563anti-parallel
Strand 4
A
540 544anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 522first strand
Strand 2
A
552 554anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 537first strand
Strand 2
A
528 530anti-parallel
Strand 3
A
576 578anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
614 616first strand
Strand 2
A
660 663anti-parallel
Strand 3
A
666 673anti-parallel
Strand 4
A
585 594anti-parallel
Strand 5
A
642 652anti-parallel
Strand 6
A
624 627anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 608first strand
Strand 2
A
634 635anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
917 918first strand
Strand 2
A
900 903anti-parallel
Strand 3
A
1000 1002parallel
Strand 4
A
1008 1009anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
906 907first strand
Strand 2
A
913 914anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
964 967first strand
Strand 2
A
1054 1058anti-parallel
Strand 3
A
1049 1051anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1087 1090first strand
Strand 2
A
1093 1096anti-parallel
Strand 3
A
1099 1100anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1128 1129first strand
Strand 2
A
1132 1133anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1177 1179first strand
Strand 2
A
1182 1195anti-parallel
Strand 3
A
1247 1261anti-parallel
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