Analysis of interatomic Contacts of Structural Units in PDB entry:
3AVW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AVW entry

There are 3 chains in PDB entry 3AVW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 1264
G
 G 2001 C 2008
T
 A 2101 A 2112
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 3AVW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 17Right-handed alpha
Helix 2
2
A
19 29Right-handed alpha
Helix 3
3
A
33 53Right-handed alpha
Helix 4
4
A
80 85Right-handed alpha
Helix 5
5
A
86 103Right-handed alpha
Helix 6
6
A
107 115Right-handed alpha
Helix 7
7
A
115 127Right-handed alpha
Helix 8
8
A
162 177Right-handed alpha
Helix 9
9
A
189 202Right-handed alpha
Helix 10
10
A
208 227Right-handed alpha
Helix 11
11
A
242 248Right-handed alpha
Helix 12
12
A
271 278Right-handed alpha
Helix 13
13
A
280 285Right-handed alpha
Helix 14
14
A
305 307Right-handed 310
Helix 15
15
A
308 323Right-handed alpha
Helix 16
16
A
368 379Right-handed alpha
Helix 17
17
A
399 410Right-handed alpha
Helix 18
18
A
427 445Right-handed alpha
Helix 19
19
A
448 452Right-handed 310
Helix 20
20
A
458 464Right-handed alpha
Helix 21
21
A
466 483Right-handed alpha
Helix 22
22
A
489 493Right-handed 310
Helix 23
23
A
567 571Right-handed 310
Helix 24
24
A
702 714Right-handed alpha
Helix 25
25
A
722 735Right-handed alpha
Helix 26
26
A
742 746Right-handed 310
Helix 27
27
A
756 769Right-handed alpha
Helix 28
28
A
783 804Right-handed alpha
Helix 29
29
A
816 834Right-handed alpha
Helix 30
30
A
838 846Right-handed alpha
Helix 31
31
A
857 861Right-handed 310
Helix 32
32
A
862 869Right-handed alpha
Helix 33
33
A
877 888Right-handed alpha
Helix 34
34
A
920 939Right-handed alpha
Helix 35
35
A
940 942Right-handed 310
Helix 36
36
A
947 962Right-handed alpha
Helix 37
37
A
977 985Right-handed alpha
Helix 38
38
A
986 997Right-handed alpha
Helix 39
39
A
1021 1042Right-handed alpha
Helix 40
40
A
1044 1048Right-handed 310
Helix 41
41
A
1061 1073Right-handed alpha
Helix 42
42
A
1112 1127Right-handed alpha
Helix 43
43
A
1134 1145Right-handed alpha
Helix 44
44
A
1146 1148Right-handed 310
Helix 45
45
A
1149 1155Right-handed alpha
Helix 46
46
A
1198 1215Right-handed alpha
Helix 47
47
A
1236 1240Right-handed 310
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There are 15 sheets in PDB entry 3AVW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 67first strand
Strand 2
A
70 78anti-parallel
Strand 3
A
131 139anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 148first strand
Strand 2
A
152 159anti-parallel
Strand 3
A
252 260anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
237 241anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 356first strand
Strand 2
A
359 365anti-parallel
Strand 3
A
296 303parallel
Strand 4
A
385 391parallel
Strand 5
A
415 420parallel
Strand 6
A
454 456parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 498first strand
Strand 2
A
576 578anti-parallel
Strand 3
A
526 530anti-parallel
Strand 4
A
536 544anti-parallel
Strand 5
A
558 563anti-parallel
Strand 6
A
509 515anti-parallel
Strand 7
A
501 505anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 498first strand
Strand 2
A
576 578anti-parallel
Strand 3
A
526 530anti-parallel
Strand 4
A
536 544anti-parallel
Strand 5
A
549 550anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 522first strand
Strand 2
A
552 554anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 595first strand
Strand 2
A
640 652anti-parallel
Strand 3
A
621 627anti-parallel
Strand 4
A
614 616anti-parallel
Strand 5
A
658 663anti-parallel
Strand 6
A
666 676anti-parallel
Strand 7
A
585 595anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
871 873first strand
Strand 2
A
894 897parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
912 918first strand
Strand 2
A
900 909anti-parallel
Strand 3
A
1000 1002parallel
Strand 4
A
1008 1010anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
964 967first strand
Strand 2
A
1054 1058anti-parallel
Strand 3
A
1049 1051anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1087 1090first strand
Strand 2
A
1093 1096anti-parallel
Strand 3
A
1099 1100anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1128 1129first strand
Strand 2
A
1132 1133anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1157first strand
Strand 2
A
1166 1167parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1177 1179first strand
Strand 2
A
1182 1195anti-parallel
Strand 3
A
1247 1261anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il