Analysis of interatomic Contacts of Structural Units in PDB entry:
3AVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AVX entry

There are 3 chains in PDB entry 3AVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 1264
G
 G 2001 C 2009
T
 A 2101 A 2113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 3AVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 14Right-handed alpha
Helix 2
2
A
33 43Right-handed alpha
Helix 3
3
A
44 53Right-handed alpha
Helix 4
4
A
80 85Right-handed alpha
Helix 5
5
A
86 99Right-handed alpha
Helix 6
6
A
107 114Right-handed alpha
Helix 7
7
A
162 177Right-handed alpha
Helix 8
8
A
189 205Right-handed alpha
Helix 9
9
A
208 227Right-handed alpha
Helix 10
10
A
241 248Right-handed alpha
Helix 11
11
A
271 285Right-handed alpha
Helix 12
12
A
308 324Right-handed alpha
Helix 13
13
A
368 378Right-handed alpha
Helix 14
14
A
399 411Right-handed alpha
Helix 15
15
A
427 445Right-handed alpha
Helix 16
16
A
466 483Right-handed alpha
Helix 17
17
A
489 493Right-handed 310
Helix 18
18
A
567 571Right-handed 310
Helix 19
19
A
597 601Right-handed 310
Helix 20
20
A
702 714Right-handed alpha
Helix 21
21
A
722 735Right-handed alpha
Helix 22
22
A
744 748Right-handed 310
Helix 23
23
A
756 770Right-handed alpha
Helix 24
24
A
783 805Right-handed alpha
Helix 25
25
A
816 834Right-handed alpha
Helix 26
26
A
838 846Right-handed alpha
Helix 27
27
A
857 861Right-handed 310
Helix 28
28
A
862 869Right-handed alpha
Helix 29
29
A
877 886Right-handed alpha
Helix 30
30
A
920 939Right-handed alpha
Helix 31
31
A
940 942Right-handed 310
Helix 32
32
A
948 962Right-handed alpha
Helix 33
33
A
971 976Right-handed 310
Helix 34
34
A
977 983Right-handed alpha
Helix 35
35
A
986 997Right-handed alpha
Helix 36
36
A
1021 1041Right-handed alpha
Helix 37
37
A
1044 1048Right-handed 310
Helix 38
38
A
1061 1072Right-handed alpha
Helix 39
39
A
1077 1081Right-handed 310
Helix 40
40
A
1112 1127Right-handed alpha
Helix 41
41
A
1134 1146Right-handed alpha
Helix 42
42
A
1149 1155Right-handed alpha
Helix 43
43
A
1198 1215Right-handed alpha
Helix 44
44
A
1236 1240Right-handed 310
Back to top of page

There are 14 sheets in PDB entry 3AVX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 66first strand
Strand 2
A
70 78anti-parallel
Strand 3
A
131 139anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 148first strand
Strand 2
A
152 159anti-parallel
Strand 3
A
252 260anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
360 365anti-parallel
Strand 3
A
296 303parallel
Strand 4
A
385 391parallel
Strand 5
A
415 420parallel
Strand 6
A
454 456parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 498first strand
Strand 2
A
576 578anti-parallel
Strand 3
A
526 530anti-parallel
Strand 4
A
536 544anti-parallel
Strand 5
A
558 563anti-parallel
Strand 6
A
509 515anti-parallel
Strand 7
A
501 505anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 498first strand
Strand 2
A
576 578anti-parallel
Strand 3
A
526 530anti-parallel
Strand 4
A
536 544anti-parallel
Strand 5
A
549 550anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 522first strand
Strand 2
A
552 554anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 595first strand
Strand 2
A
642 652anti-parallel
Strand 3
A
621 627anti-parallel
Strand 4
A
614 616anti-parallel
Strand 5
A
658 663anti-parallel
Strand 6
A
666 676anti-parallel
Strand 7
A
585 595anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
871 873first strand
Strand 2
A
894 897parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
914 918first strand
Strand 2
A
900 906anti-parallel
Strand 3
A
1000 1002parallel
Strand 4
A
1008 1010anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
964 967first strand
Strand 2
A
1054 1058anti-parallel
Strand 3
A
1049 1051anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1087 1090first strand
Strand 2
A
1093 1096anti-parallel
Strand 3
A
1099 1100anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1128 1129first strand
Strand 2
A
1132 1133anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1157first strand
Strand 2
A
1166 1167parallel
Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1177 1179first strand
Strand 2
A
1182 1194anti-parallel
Strand 3
A
1248 1260anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il