Analysis of interatomic Contacts of Structural Units in PDB entry:
3AVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AVY entry

There are 3 chains in PDB entry 3AVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 1264
G
 C 2006 U 2013
T
 A 2102 C 2115
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 3AVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 14Right-handed alpha
Helix 2
2
A
19 29Right-handed alpha
Helix 3
3
A
33 54Right-handed alpha
Helix 4
4
A
80 85Right-handed alpha
Helix 5
5
A
86 102Right-handed alpha
Helix 6
6
A
107 115Right-handed alpha
Helix 7
7
A
115 127Right-handed alpha
Helix 8
8
A
162 177Right-handed alpha
Helix 9
9
A
182 186Right-handed 310
Helix 10
10
A
189 204Right-handed alpha
Helix 11
11
A
208 227Right-handed alpha
Helix 12
12
A
228 232Right-handed 310
Helix 13
13
A
241 248Right-handed alpha
Helix 14
14
A
271 278Right-handed alpha
Helix 15
15
A
308 323Right-handed alpha
Helix 16
16
A
368 378Right-handed alpha
Helix 17
17
A
399 411Right-handed alpha
Helix 18
18
A
427 445Right-handed alpha
Helix 19
19
A
448 452Right-handed 310
Helix 20
20
A
458 464Right-handed alpha
Helix 21
21
A
466 484Right-handed alpha
Helix 22
22
A
489 493Right-handed 310
Helix 23
23
A
567 571Right-handed 310
Helix 24
24
A
597 601Right-handed 310
Helix 25
25
A
703 714Right-handed alpha
Helix 26
26
A
722 735Right-handed alpha
Helix 27
27
A
742 747Right-handed alpha
Helix 28
28
A
756 769Right-handed alpha
Helix 29
29
A
783 805Right-handed alpha
Helix 30
30
A
816 834Right-handed alpha
Helix 31
31
A
838 846Right-handed alpha
Helix 32
32
A
857 861Right-handed 310
Helix 33
33
A
862 869Right-handed alpha
Helix 34
34
A
877 886Right-handed alpha
Helix 35
35
A
920 938Right-handed alpha
Helix 36
36
A
939 942Right-handed 310
Helix 37
37
A
948 962Right-handed alpha
Helix 38
38
A
972 976Right-handed 310
Helix 39
39
A
977 985Right-handed alpha
Helix 40
40
A
986 997Right-handed alpha
Helix 41
41
A
1021 1042Right-handed alpha
Helix 42
42
A
1044 1048Right-handed 310
Helix 43
43
A
1061 1073Right-handed alpha
Helix 44
44
A
1112 1127Right-handed alpha
Helix 45
45
A
1134 1146Right-handed alpha
Helix 46
46
A
1147 1148Right-handed 310
Helix 47
47
A
1149 1154Right-handed 310
Helix 48
48
A
1198 1215Right-handed alpha
Helix 49
49
A
1236 1240Right-handed 310
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There are 14 sheets in PDB entry 3AVY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 67first strand
Strand 2
A
70 78anti-parallel
Strand 3
A
132 139anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 148first strand
Strand 2
A
152 159anti-parallel
Strand 3
A
252 260anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
360 365anti-parallel
Strand 3
A
296 303parallel
Strand 4
A
385 391parallel
Strand 5
A
415 420parallel
Strand 6
A
454 456parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 498first strand
Strand 2
A
576 578anti-parallel
Strand 3
A
526 530anti-parallel
Strand 4
A
536 544anti-parallel
Strand 5
A
558 563anti-parallel
Strand 6
A
509 515anti-parallel
Strand 7
A
501 505anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 498first strand
Strand 2
A
576 578anti-parallel
Strand 3
A
526 530anti-parallel
Strand 4
A
536 544anti-parallel
Strand 5
A
549 550anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 522first strand
Strand 2
A
552 554anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 595first strand
Strand 2
A
640 653anti-parallel
Strand 3
A
621 627anti-parallel
Strand 4
A
614 616anti-parallel
Strand 5
A
658 663anti-parallel
Strand 6
A
666 676anti-parallel
Strand 7
A
584 595anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
871 873first strand
Strand 2
A
894 897parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
912 918first strand
Strand 2
A
900 909anti-parallel
Strand 3
A
1000 1002parallel
Strand 4
A
1008 1010anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
964 967first strand
Strand 2
A
1054 1058anti-parallel
Strand 3
A
1049 1051anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1087 1090first strand
Strand 2
A
1093 1096anti-parallel
Strand 3
A
1099 1100anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1128 1129first strand
Strand 2
A
1132 1133anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1157first strand
Strand 2
A
1166 1167parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1177 1179first strand
Strand 2
A
1182 1194anti-parallel
Strand 3
A
1248 1260anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il