Analysis of interatomic Contacts of Structural Units in PDB entry:
3AXL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AXL entry

There are 4 chains in PDB entry 3AXL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3SER 218
B
 ALA 3ALA 256
G
 GLN 3SER 218
H
 ALA 3ALA 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 3AXL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
95 99Right-handed 310
Helix 2
2
B
95 99Right-handed 310
Helix 3
3
B
129 133Right-handed 310
Helix 4
4
B
144 152Right-handed alpha
Helix 5
5
B
211 215Right-handed alpha
Helix 6
6
G
95 99Right-handed 310
Helix 7
7
H
95 99Right-handed 310
Helix 8
8
H
129 133Right-handed 310
Helix 9
9
H
144 152Right-handed alpha
Helix 10
10
H
211 215Right-handed alpha
Back to top of page

There are 20 sheets in PDB entry 3AXL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
86 91anti-parallel
Strand 4
A
72 82anti-parallel
Strand 5
A
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
31 44anti-parallel
Strand 3
A
100 107anti-parallel
Strand 4
A
122 127anti-parallel
Strand 5
A
10 14parallel
Strand 6
G
10 14anti-parallel
Strand 7
G
122 127parallel
Strand 8
G
100 107anti-parallel
Strand 9
G
31 44anti-parallel
Strand 10
G
51 57anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
100 107anti-parallel
Strand 3
A
122 127anti-parallel
Strand 4
A
10 14parallel
Strand 5
G
10 14anti-parallel
Strand 6
G
122 127parallel
Strand 7
G
100 107anti-parallel
Strand 8
G
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 139first strand
Strand 2
A
151 154anti-parallel
Strand 3
A
185 193anti-parallel
Strand 4
A
171 172anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 139first strand
Strand 2
A
151 154anti-parallel
Strand 3
A
185 193anti-parallel
Strand 4
A
176 180anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
85 91anti-parallel
Strand 4
B
76 78anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
122 127parallel
Strand 3
B
100 107anti-parallel
Strand 4
B
31 44anti-parallel
Strand 5
B
50 56anti-parallel
Strand 6
B
63 64anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
122 127parallel
Strand 3
B
100 107anti-parallel
Strand 4
B
116 118anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 141first strand
Strand 2
B
153 163anti-parallel
Strand 3
B
201 210anti-parallel
Strand 4
B
183 185anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 141first strand
Strand 2
B
153 163anti-parallel
Strand 3
B
201 210anti-parallel
Strand 4
B
190 191anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 179first strand
Strand 2
B
168 174anti-parallel
Strand 3
B
220 227anti-parallel
Strand 4
B
246 253anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
4 7first strand
Strand 2
G
19 25anti-parallel
Strand 3
G
85 91anti-parallel
Strand 4
G
72 82anti-parallel
Strand 5
G
62 63anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
136 140first strand
Strand 2
G
150 154anti-parallel
Strand 3
G
185 193anti-parallel
Strand 4
G
171 172anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
136 140first strand
Strand 2
G
150 154anti-parallel
Strand 3
G
185 193anti-parallel
Strand 4
G
176 180anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 7first strand
Strand 2
H
19 24anti-parallel
Strand 3
H
85 91anti-parallel
Strand 4
H
76 78anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 14first strand
Strand 2
H
122 127parallel
Strand 3
H
100 107anti-parallel
Strand 4
H
31 44anti-parallel
Strand 5
H
50 56anti-parallel
Strand 6
H
63 64anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 14first strand
Strand 2
H
122 127parallel
Strand 3
H
100 107anti-parallel
Strand 4
H
116 118anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
137 141first strand
Strand 2
H
153 163anti-parallel
Strand 3
H
201 210anti-parallel
Strand 4
H
183 185anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
137 141first strand
Strand 2
H
153 163anti-parallel
Strand 3
H
201 210anti-parallel
Strand 4
H
190 191anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
177 178first strand
Strand 2
H
168 174anti-parallel
Strand 3
H
220 227anti-parallel
Strand 4
H
246 253anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il