Analysis of interatomic Contacts of Structural Units in PDB entry:
3AXM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3AXM entry

There are 24 chains in PDB entry 3AXM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 12	THR 200
A	ASP 202	LYS 463
S	MET 1	CYS 123
B	GLY 12	THR 200
B	ASP 202	LYS 463
T	MET 1	CYS 123
C	GLY 12	THR 200
C	ASP 202	LYS 463
U	MET 1	CYS 123
D	GLY 12	THR 200
D	ASP 202	LYS 463
V	MET 1	CYS 123
E	GLY 12	THR 200
E	ASP 202	LYS 463
W	MET 1	CYS 123
F	GLY 12	THR 200
F	ASP 202	LYS 463
X	MET 1	CYS 123
G	GLY 12	THR 200
G	ASP 202	LYS 463
Y	MET 1	CYS 123
H	GLY 12	THR 200
H	ASP 202	LYS 463
Z	MET 1	CYS 123

There are200 helices in PDB entry 3AXM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	49	60	Right-handed alpha
Helix 2	2	A	69	75	Right-handed 310
Helix 3	3	A	76	80	Right-handed 310
Helix 4	4	A	104	108	Right-handed 310
Helix 5	5	A	112	122	Right-handed alpha
Helix 6	6	A	123	127	Right-handed 310
Helix 7	7	A	141	146	Right-handed alpha
Helix 8	8	A	154	163	Right-handed alpha
Helix 9	9	A	181	195	Right-handed alpha
Helix 10	10	A	213	233	Right-handed alpha
Helix 11	11	A	246	261	Right-handed alpha
Helix 12	12	A	269	273	Right-handed alpha
Helix 13	13	A	273	288	Right-handed alpha
Helix 14	14	A	297	303	Right-handed alpha
Helix 15	15	A	310	322	Right-handed alpha
Helix 16	16	A	338	351	Right-handed alpha
Helix 17	17	A	357	361	Right-handed 310
Helix 18	18	A	383	385	Right-handed 310
Helix 19	19	A	386	395	Right-handed alpha
Helix 20	20	A	403	408	Right-handed alpha
Helix 21	21	A	412	434	Right-handed alpha
Helix 22	22	A	436	450	Right-handed alpha
Helix 23	23	A	452	462	Right-handed alpha
Helix 24	24	S	22	36	Right-handed alpha
Helix 25	25	S	79	94	Right-handed alpha
Helix 26	26	B	49	60	Right-handed alpha
Helix 27	27	B	69	75	Right-handed 310
Helix 28	28	B	76	80	Right-handed 310
Helix 29	29	B	104	108	Right-handed 310
Helix 30	30	B	112	122	Right-handed alpha
Helix 31	31	B	123	127	Right-handed 310
Helix 32	32	B	141	146	Right-handed alpha
Helix 33	33	B	154	163	Right-handed alpha
Helix 34	34	B	181	195	Right-handed alpha
Helix 35	35	B	213	233	Right-handed alpha
Helix 36	36	B	246	261	Right-handed alpha
Helix 37	37	B	269	273	Right-handed alpha
Helix 38	38	B	273	288	Right-handed alpha
Helix 39	39	B	297	303	Right-handed alpha
Helix 40	40	B	310	322	Right-handed alpha
Helix 41	41	B	338	351	Right-handed alpha
Helix 42	42	B	357	361	Right-handed 310
Helix 43	43	B	383	385	Right-handed 310
Helix 44	44	B	386	395	Right-handed alpha
Helix 45	45	B	403	408	Right-handed alpha
Helix 46	46	B	412	434	Right-handed alpha
Helix 47	47	B	436	450	Right-handed alpha
Helix 48	48	B	452	462	Right-handed alpha
Helix 49	49	T	22	36	Right-handed alpha
Helix 50	50	T	79	94	Right-handed alpha
Helix 51	51	C	49	61	Right-handed alpha
Helix 52	52	C	69	75	Right-handed 310
Helix 53	53	C	76	80	Right-handed 310
Helix 54	54	C	104	108	Right-handed 310
Helix 55	55	C	112	122	Right-handed alpha
Helix 56	56	C	123	127	Right-handed 310
Helix 57	57	C	141	146	Right-handed alpha
Helix 58	58	C	154	163	Right-handed alpha
Helix 59	59	C	181	195	Right-handed alpha
Helix 60	60	C	213	233	Right-handed alpha
Helix 61	61	C	246	261	Right-handed alpha
Helix 62	62	C	269	273	Right-handed alpha
Helix 63	63	C	273	288	Right-handed alpha
Helix 64	64	C	297	303	Right-handed alpha
Helix 65	65	C	310	322	Right-handed alpha
Helix 66	66	C	338	351	Right-handed alpha
Helix 67	67	C	357	361	Right-handed 310
Helix 68	68	C	383	385	Right-handed 310
Helix 69	69	C	386	395	Right-handed alpha
Helix 70	70	C	403	408	Right-handed alpha
Helix 71	71	C	412	434	Right-handed alpha
Helix 72	72	C	436	450	Right-handed alpha
Helix 73	73	C	452	462	Right-handed alpha
Helix 74	74	U	22	36	Right-handed alpha
Helix 75	75	U	79	94	Right-handed alpha
Helix 76	76	D	49	60	Right-handed alpha
Helix 77	77	D	69	75	Right-handed 310
Helix 78	78	D	76	80	Right-handed 310
Helix 79	79	D	104	108	Right-handed 310
Helix 80	80	D	112	122	Right-handed alpha
Helix 81	81	D	123	127	Right-handed 310
Helix 82	82	D	141	146	Right-handed alpha
Helix 83	83	D	154	163	Right-handed alpha
Helix 84	84	D	181	195	Right-handed alpha
Helix 85	85	D	213	233	Right-handed alpha
Helix 86	86	D	246	261	Right-handed alpha
Helix 87	87	D	269	273	Right-handed alpha
Helix 88	88	D	273	288	Right-handed alpha
Helix 89	89	D	297	303	Right-handed alpha
Helix 90	90	D	310	322	Right-handed alpha
Helix 91	91	D	338	351	Right-handed alpha
Helix 92	92	D	357	361	Right-handed 310
Helix 93	93	D	383	385	Right-handed 310
Helix 94	94	D	386	395	Right-handed alpha
Helix 95	95	D	403	408	Right-handed alpha
Helix 96	96	D	412	433	Right-handed alpha
Helix 97	97	D	436	450	Right-handed alpha
Helix 98	98	D	452	462	Right-handed alpha
Helix 99	99	V	22	36	Right-handed alpha
Helix 100	100	V	79	94	Right-handed alpha
Helix 101	101	E	49	61	Right-handed alpha
Helix 102	102	E	69	75	Right-handed 310
Helix 103	103	E	76	80	Right-handed 310
Helix 104	104	E	104	108	Right-handed 310
Helix 105	105	E	112	122	Right-handed alpha
Helix 106	106	E	123	127	Right-handed 310
Helix 107	107	E	141	146	Right-handed alpha
Helix 108	108	E	154	163	Right-handed alpha
Helix 109	109	E	181	195	Right-handed alpha
Helix 110	110	E	213	233	Right-handed alpha
Helix 111	111	E	246	261	Right-handed alpha
Helix 112	112	E	269	273	Right-handed alpha
Helix 113	113	E	273	288	Right-handed alpha
Helix 114	114	E	297	303	Right-handed alpha
Helix 115	115	E	310	322	Right-handed alpha
Helix 116	116	E	338	351	Right-handed alpha
Helix 117	117	E	357	361	Right-handed 310
Helix 118	118	E	383	385	Right-handed 310
Helix 119	119	E	386	395	Right-handed alpha
Helix 120	120	E	403	408	Right-handed alpha
Helix 121	121	E	412	434	Right-handed alpha
Helix 122	122	E	436	452	Right-handed alpha
Helix 123	123	E	452	462	Right-handed alpha
Helix 124	124	W	22	36	Right-handed alpha
Helix 125	125	W	79	94	Right-handed alpha
Helix 126	126	F	49	61	Right-handed alpha
Helix 127	127	F	69	75	Right-handed 310
Helix 128	128	F	76	80	Right-handed 310
Helix 129	129	F	104	108	Right-handed 310
Helix 130	130	F	112	122	Right-handed alpha
Helix 131	131	F	123	127	Right-handed 310
Helix 132	132	F	141	146	Right-handed alpha
Helix 133	133	F	154	163	Right-handed alpha
Helix 134	134	F	181	195	Right-handed alpha
Helix 135	135	F	213	233	Right-handed alpha
Helix 136	136	F	246	261	Right-handed alpha
Helix 137	137	F	269	273	Right-handed alpha
Helix 138	138	F	273	288	Right-handed alpha
Helix 139	139	F	297	303	Right-handed alpha
Helix 140	140	F	310	322	Right-handed alpha
Helix 141	141	F	338	351	Right-handed alpha
Helix 142	142	F	357	361	Right-handed 310
Helix 143	143	F	383	385	Right-handed 310
Helix 144	144	F	386	395	Right-handed alpha
Helix 145	145	F	403	408	Right-handed alpha
Helix 146	146	F	412	433	Right-handed alpha
Helix 147	147	F	436	450	Right-handed alpha
Helix 148	148	F	452	462	Right-handed alpha
Helix 149	149	X	22	36	Right-handed alpha
Helix 150	150	X	79	94	Right-handed alpha
Helix 151	151	G	49	60	Right-handed alpha
Helix 152	152	G	69	75	Right-handed 310
Helix 153	153	G	76	80	Right-handed 310
Helix 154	154	G	104	108	Right-handed 310
Helix 155	155	G	112	122	Right-handed alpha
Helix 156	156	G	123	127	Right-handed 310
Helix 157	157	G	141	146	Right-handed alpha
Helix 158	158	G	154	163	Right-handed alpha
Helix 159	159	G	181	195	Right-handed alpha
Helix 160	160	G	213	233	Right-handed alpha
Helix 161	161	G	246	261	Right-handed alpha
Helix 162	162	G	269	273	Right-handed alpha
Helix 163	163	G	273	288	Right-handed alpha
Helix 164	164	G	297	303	Right-handed alpha
Helix 165	165	G	310	322	Right-handed alpha
Helix 166	166	G	338	351	Right-handed alpha
Helix 167	167	G	357	361	Right-handed 310
Helix 168	168	G	383	385	Right-handed 310
Helix 169	169	G	386	395	Right-handed alpha
Helix 170	170	G	403	408	Right-handed alpha
Helix 171	171	G	412	434	Right-handed alpha
Helix 172	172	G	436	450	Right-handed alpha
Helix 173	173	G	452	462	Right-handed alpha
Helix 174	174	Y	22	36	Right-handed alpha
Helix 175	175	Y	79	94	Right-handed alpha
Helix 176	176	H	49	60	Right-handed alpha
Helix 177	177	H	69	75	Right-handed 310
Helix 178	178	H	76	80	Right-handed 310
Helix 179	179	H	104	108	Right-handed 310
Helix 180	180	H	112	122	Right-handed alpha
Helix 181	181	H	123	127	Right-handed 310
Helix 182	182	H	141	146	Right-handed alpha
Helix 183	183	H	154	163	Right-handed alpha
Helix 184	184	H	181	195	Right-handed alpha
Helix 185	185	H	213	233	Right-handed alpha
Helix 186	186	H	246	261	Right-handed alpha
Helix 187	187	H	269	273	Right-handed alpha
Helix 188	188	H	273	288	Right-handed alpha
Helix 189	189	H	297	303	Right-handed alpha
Helix 190	190	H	310	322	Right-handed alpha
Helix 191	191	H	338	351	Right-handed alpha
Helix 192	192	H	357	361	Right-handed 310
Helix 193	193	H	383	385	Right-handed 310
Helix 194	194	H	386	395	Right-handed alpha
Helix 195	195	H	403	408	Right-handed alpha
Helix 196	196	H	412	434	Right-handed alpha
Helix 197	197	H	436	450	Right-handed alpha
Helix 198	198	H	452	462	Right-handed alpha
Helix 199	199	Z	22	36	Right-handed alpha
Helix 200	200	Z	79	94	Right-handed alpha

There are 32 sheets in PDB entry 3AXM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	89	first strand
Strand 2	A	97	103	anti-parallel
Strand 3	A	36	44	anti-parallel
Strand 4	A	130	139	anti-parallel
Strand 5	A	308	309	parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	173	first strand
Strand 2	A	199	201	parallel
Strand 3	A	237	241	parallel
Strand 4	A	264	268	parallel
Strand 5	A	290	294	parallel
Strand 6	A	325	329	parallel
Strand 7	A	375	378	parallel
Strand 8	A	399	401	parallel
Strand 9	A	169	173	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	366	367	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	68	70	first strand
Strand 2	S	39	45	anti-parallel
Strand 3	S	98	105	anti-parallel
Strand 4	S	110	118	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	89	first strand
Strand 2	B	97	103	anti-parallel
Strand 3	B	36	44	anti-parallel
Strand 4	B	130	139	anti-parallel
Strand 5	B	308	309	parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	173	first strand
Strand 2	B	199	201	parallel
Strand 3	B	237	241	parallel
Strand 4	B	264	268	parallel
Strand 5	B	290	294	parallel
Strand 6	B	325	329	parallel
Strand 7	B	375	378	parallel
Strand 8	B	399	401	parallel
Strand 9	B	169	173	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	354	first strand
Strand 2	B	366	367	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	68	70	first strand
Strand 2	T	39	45	anti-parallel
Strand 3	T	98	105	anti-parallel
Strand 4	T	110	118	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	89	first strand
Strand 2	C	97	103	anti-parallel
Strand 3	C	36	44	anti-parallel
Strand 4	C	130	139	anti-parallel
Strand 5	C	308	309	parallel

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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	173	first strand
Strand 2	C	199	201	parallel
Strand 3	C	237	241	parallel
Strand 4	C	264	268	parallel
Strand 5	C	290	294	parallel
Strand 6	C	325	329	parallel
Strand 7	C	375	378	parallel
Strand 8	C	399	401	parallel
Strand 9	C	169	173	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	354	first strand
Strand 2	C	366	367	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	68	70	first strand
Strand 2	U	39	45	anti-parallel
Strand 3	U	98	105	anti-parallel
Strand 4	U	110	118	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	89	first strand
Strand 2	D	97	103	anti-parallel
Strand 3	D	36	44	anti-parallel
Strand 4	D	130	139	anti-parallel
Strand 5	D	308	309	parallel

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There are 9 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	173	first strand
Strand 2	D	199	201	parallel
Strand 3	D	237	241	parallel
Strand 4	D	264	268	parallel
Strand 5	D	290	294	parallel
Strand 6	D	325	329	parallel
Strand 7	D	375	378	parallel
Strand 8	D	399	401	parallel
Strand 9	D	169	173	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	354	first strand
Strand 2	D	366	367	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	68	70	first strand
Strand 2	V	39	45	anti-parallel
Strand 3	V	98	105	anti-parallel
Strand 4	V	110	118	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	89	first strand
Strand 2	E	97	103	anti-parallel
Strand 3	E	36	44	anti-parallel
Strand 4	E	130	139	anti-parallel
Strand 5	E	308	309	parallel

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There are 9 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	173	first strand
Strand 2	E	199	201	parallel
Strand 3	E	237	241	parallel
Strand 4	E	264	268	parallel
Strand 5	E	290	294	parallel
Strand 6	E	325	329	parallel
Strand 7	E	375	378	parallel
Strand 8	E	399	401	parallel
Strand 9	E	169	173	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	353	354	first strand
Strand 2	E	366	367	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	68	70	first strand
Strand 2	W	39	45	anti-parallel
Strand 3	W	98	105	anti-parallel
Strand 4	W	110	118	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	89	first strand
Strand 2	F	97	103	anti-parallel
Strand 3	F	36	44	anti-parallel
Strand 4	F	130	139	anti-parallel
Strand 5	F	308	309	parallel

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There are 9 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	173	first strand
Strand 2	F	199	201	parallel
Strand 3	F	237	241	parallel
Strand 4	F	264	268	parallel
Strand 5	F	290	294	parallel
Strand 6	F	325	329	parallel
Strand 7	F	375	378	parallel
Strand 8	F	399	401	parallel
Strand 9	F	169	173	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	353	354	first strand
Strand 2	F	366	367	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	68	70	first strand
Strand 2	X	39	45	anti-parallel
Strand 3	X	98	105	anti-parallel
Strand 4	X	110	118	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	89	first strand
Strand 2	G	97	103	anti-parallel
Strand 3	G	36	44	anti-parallel
Strand 4	G	130	139	anti-parallel
Strand 5	G	308	309	parallel

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There are 9 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	173	first strand
Strand 2	G	199	201	parallel
Strand 3	G	237	241	parallel
Strand 4	G	264	268	parallel
Strand 5	G	290	294	parallel
Strand 6	G	325	329	parallel
Strand 7	G	375	378	parallel
Strand 8	G	399	401	parallel
Strand 9	G	169	173	parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	353	354	first strand
Strand 2	G	366	367	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	68	70	first strand
Strand 2	Y	39	45	anti-parallel
Strand 3	Y	98	105	anti-parallel
Strand 4	Y	110	118	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	83	89	first strand
Strand 2	H	97	103	anti-parallel
Strand 3	H	36	44	anti-parallel
Strand 4	H	130	139	anti-parallel
Strand 5	H	308	309	parallel

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There are 9 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	169	173	first strand
Strand 2	H	199	201	parallel
Strand 3	H	237	241	parallel
Strand 4	H	264	268	parallel
Strand 5	H	290	294	parallel
Strand 6	H	325	327	parallel
Strand 7	H	375	378	parallel
Strand 8	H	399	401	parallel
Strand 9	H	169	173	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	353	354	first strand
Strand 2	H	366	367	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	68	70	first strand
Strand 2	Z	39	45	anti-parallel
Strand 3	Z	98	105	anti-parallel
Strand 4	Z	110	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3AXM

Analysis of interatomic Contacts of Structural Units in PDB entry:
3AXM