Analysis of interatomic Contacts of Structural Units in PDB entry:
3AYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AYR entry

There is 1 chain in PDB entry 3AYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -7LYS 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3AYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed alpha
Helix 2
2
A
11 13Right-handed 310
Helix 3
3
A
32 36Right-handed 310
Helix 4
4
A
38 43Right-handed 310
Helix 5
5
A
50 60Right-handed alpha
Helix 6
6
A
84 100Right-handed alpha
Helix 7
7
A
121 140Right-handed alpha
Helix 8
8
A
168 188Right-handed alpha
Helix 9
9
A
192 196Right-handed 310
Helix 10
10
A
202 206Right-handed 310
Helix 11
11
A
208 214Right-handed alpha
Helix 12
12
A
233 238Right-handed alpha
Helix 13
13
A
249 267Right-handed alpha
Helix 14
14
A
268 271Right-handed 310
Helix 15
15
A
286 303Right-handed alpha
Helix 16
16
A
335 347Right-handed alpha
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There are 2 sheets in PDB entry 3AYR. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 19first strand
Strand 2
A
64 67parallel
Strand 3
A
104 108parallel
Strand 4
A
147 150parallel
Strand 5
A
198 200parallel
Strand 6
A
224 229parallel
Strand 7
A
274 279parallel
Strand 8
A
308 312parallel
Strand 9
A
16 19parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 327first strand
Strand 2
A
332 333anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il