Analysis of interatomic Contacts of Structural Units in PDB entry:
3AYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3AYV entry

There are 4 chains in PDB entry 3AYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 241
B
 MET 1ARG 243
C
 MET 1GLU 241
D
 MET 1THR 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 3AYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 23Right-handed alpha
Helix 2
2
A
31 35Right-handed 310
Helix 3
3
A
37 48Right-handed alpha
Helix 4
4
A
67 88Right-handed alpha
Helix 5
5
A
104 111Right-handed alpha
Helix 6
6
A
111 119Right-handed alpha
Helix 7
7
A
119 130Right-handed alpha
Helix 8
8
A
142 145Right-handed 310
Helix 9
9
A
146 154Right-handed alpha
Helix 10
10
A
163 170Right-handed alpha
Helix 11
11
A
175 180Right-handed alpha
Helix 12
12
A
207 211Right-handed 310
Helix 13
13
A
212 216Right-handed 310
Helix 14
14
A
228 241Right-handed alpha
Helix 15
15
B
11 22Right-handed alpha
Helix 16
16
B
31 35Right-handed 310
Helix 17
17
B
37 48Right-handed alpha
Helix 18
18
B
67 88Right-handed alpha
Helix 19
19
B
104 119Right-handed alpha
Helix 20
20
B
119 130Right-handed alpha
Helix 21
21
B
142 145Right-handed 310
Helix 22
22
B
146 153Right-handed alpha
Helix 23
23
B
163 170Right-handed alpha
Helix 24
24
B
175 180Right-handed alpha
Helix 25
25
B
207 211Right-handed 310
Helix 26
26
B
212 216Right-handed 310
Helix 27
27
B
228 240Right-handed alpha
Helix 28
28
C
11 23Right-handed alpha
Helix 29
29
C
31 35Right-handed 310
Helix 30
30
C
37 48Right-handed alpha
Helix 31
31
C
67 88Right-handed alpha
Helix 32
32
C
104 119Right-handed alpha
Helix 33
33
C
119 130Right-handed alpha
Helix 34
34
C
142 145Right-handed 310
Helix 35
35
C
146 153Right-handed alpha
Helix 36
36
C
163 170Right-handed alpha
Helix 37
37
C
174 180Right-handed alpha
Helix 38
38
C
207 211Right-handed 310
Helix 39
39
C
212 216Right-handed 310
Helix 40
40
C
228 241Right-handed alpha
Helix 41
41
D
11 23Right-handed alpha
Helix 42
42
D
31 35Right-handed 310
Helix 43
43
D
37 48Right-handed alpha
Helix 44
44
D
67 88Right-handed alpha
Helix 45
45
D
104 119Right-handed alpha
Helix 46
46
D
119 130Right-handed alpha
Helix 47
47
D
142 145Right-handed 310
Helix 48
48
D
146 153Right-handed alpha
Helix 49
49
D
163 170Right-handed alpha
Helix 50
50
D
174 180Right-handed alpha
Helix 51
51
D
207 211Right-handed 310
Helix 52
52
D
212 216Right-handed 310
Helix 53
53
D
228 242Right-handed alpha
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There are 4 sheets in PDB entry 3AYV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
25 29parallel
Strand 3
A
52 55parallel
Strand 4
A
92 96parallel
Strand 5
A
132 136parallel
Strand 6
A
158 162parallel
Strand 7
A
185 188parallel
Strand 8
A
219 222parallel
Strand 9
A
3 8parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
25 29parallel
Strand 3
B
52 55parallel
Strand 4
B
92 96parallel
Strand 5
B
132 136parallel
Strand 6
B
158 162parallel
Strand 7
B
185 188parallel
Strand 8
B
219 222parallel
Strand 9
B
3 8parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 8first strand
Strand 2
C
25 29parallel
Strand 3
C
52 55parallel
Strand 4
C
92 96parallel
Strand 5
C
132 136parallel
Strand 6
C
158 162parallel
Strand 7
C
185 188parallel
Strand 8
C
219 222parallel
Strand 9
C
3 8parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 8first strand
Strand 2
D
25 29parallel
Strand 3
D
52 55parallel
Strand 4
D
92 96parallel
Strand 5
D
132 136parallel
Strand 6
D
158 162parallel
Strand 7
D
185 188parallel
Strand 8
D
219 222parallel
Strand 9
D
3 8parallel
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