Analysis of interatomic Contacts of Structural Units in PDB entry:
3B05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B05 entry

There are 4 chains in PDB entry 3B05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3LYS 366
B
 ASP 3LYS 366
C
 ASP 3LYS 366
D
 ASP 3LYS 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 3B05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 18Right-handed alpha
Helix 2
2
A
28 30Right-handed 310
Helix 3
3
A
43 47Right-handed 310
Helix 4
4
A
71 89Right-handed alpha
Helix 5
5
A
97 103Right-handed alpha
Helix 6
6
A
104 106Right-handed 310
Helix 7
7
A
107 117Right-handed alpha
Helix 8
8
A
128 133Right-handed alpha
Helix 9
9
A
136 146Right-handed alpha
Helix 10
10
A
157 164Right-handed alpha
Helix 11
11
A
173 184Right-handed alpha
Helix 12
12
A
200 210Right-handed alpha
Helix 13
13
A
224 237Right-handed alpha
Helix 14
14
A
239 247Right-handed alpha
Helix 15
15
A
253 265Right-handed alpha
Helix 16
16
A
278 289Right-handed alpha
Helix 17
17
A
296 306Right-handed alpha
Helix 18
18
A
306 327Right-handed alpha
Helix 19
19
A
332 338Right-handed alpha
Helix 20
20
A
344 354Right-handed alpha
Helix 21
21
A
357 366Right-handed alpha
Helix 22
22
B
3 18Right-handed alpha
Helix 23
23
B
28 30Right-handed 310
Helix 24
24
B
43 47Right-handed 310
Helix 25
25
B
71 89Right-handed alpha
Helix 26
26
B
97 103Right-handed alpha
Helix 27
27
B
104 106Right-handed 310
Helix 28
28
B
107 117Right-handed alpha
Helix 29
29
B
128 133Right-handed alpha
Helix 30
30
B
136 146Right-handed alpha
Helix 31
31
B
157 164Right-handed alpha
Helix 32
32
B
173 186Right-handed alpha
Helix 33
33
B
200 210Right-handed alpha
Helix 34
34
B
224 236Right-handed alpha
Helix 35
35
B
239 247Right-handed alpha
Helix 36
36
B
253 265Right-handed alpha
Helix 37
37
B
278 289Right-handed alpha
Helix 38
38
B
296 306Right-handed alpha
Helix 39
39
B
306 328Right-handed alpha
Helix 40
40
B
332 338Right-handed alpha
Helix 41
41
B
344 354Right-handed alpha
Helix 42
42
B
357 366Right-handed alpha
Helix 43
43
C
3 18Right-handed alpha
Helix 44
44
C
28 30Right-handed 310
Helix 45
45
C
43 47Right-handed 310
Helix 46
46
C
71 89Right-handed alpha
Helix 47
47
C
97 103Right-handed alpha
Helix 48
48
C
104 106Right-handed 310
Helix 49
49
C
107 117Right-handed alpha
Helix 50
50
C
128 133Right-handed alpha
Helix 51
51
C
136 146Right-handed alpha
Helix 52
52
C
157 164Right-handed alpha
Helix 53
53
C
173 186Right-handed alpha
Helix 54
54
C
200 210Right-handed alpha
Helix 55
55
C
224 236Right-handed alpha
Helix 56
56
C
239 247Right-handed alpha
Helix 57
57
C
253 265Right-handed alpha
Helix 58
58
C
278 289Right-handed alpha
Helix 59
59
C
296 306Right-handed alpha
Helix 60
60
C
306 327Right-handed alpha
Helix 61
61
C
332 338Right-handed alpha
Helix 62
62
C
344 354Right-handed alpha
Helix 63
63
C
357 366Right-handed alpha
Helix 64
64
D
3 18Right-handed alpha
Helix 65
65
D
28 30Right-handed 310
Helix 66
66
D
43 47Right-handed 310
Helix 67
67
D
71 89Right-handed alpha
Helix 68
68
D
97 103Right-handed alpha
Helix 69
69
D
106 117Right-handed alpha
Helix 70
70
D
128 133Right-handed alpha
Helix 71
71
D
136 146Right-handed alpha
Helix 72
72
D
157 164Right-handed alpha
Helix 73
73
D
173 186Right-handed alpha
Helix 74
74
D
200 210Right-handed alpha
Helix 75
75
D
224 237Right-handed alpha
Helix 76
76
D
239 247Right-handed alpha
Helix 77
77
D
253 265Right-handed alpha
Helix 78
78
D
278 288Right-handed alpha
Helix 79
79
D
296 306Right-handed alpha
Helix 80
80
D
306 328Right-handed alpha
Helix 81
81
D
332 338Right-handed alpha
Helix 82
82
D
344 354Right-handed alpha
Helix 83
83
D
357 366Right-handed alpha
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There are 12 sheets in PDB entry 3B05. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
341 343anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
56 58anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
92 93parallel
Strand 3
A
122 127parallel
Strand 4
A
151 155parallel
Strand 5
A
190 193parallel
Strand 6
A
214 216parallel
Strand 7
A
269 273parallel
Strand 8
A
292 295parallel
Strand 9
A
62 64parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
341 343anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
56 58anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
92 93parallel
Strand 3
B
122 127parallel
Strand 4
B
151 155parallel
Strand 5
B
190 193parallel
Strand 6
B
214 216parallel
Strand 7
B
269 273parallel
Strand 8
B
292 295parallel
Strand 9
B
62 64parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 34first strand
Strand 2
C
341 343anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 53first strand
Strand 2
C
56 58anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 64first strand
Strand 2
C
92 93parallel
Strand 3
C
122 127parallel
Strand 4
C
151 155parallel
Strand 5
C
190 193parallel
Strand 6
C
214 216parallel
Strand 7
C
269 273parallel
Strand 8
C
292 295parallel
Strand 9
C
62 64parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 34first strand
Strand 2
D
341 343anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 53first strand
Strand 2
D
56 58anti-parallel
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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 64first strand
Strand 2
D
92 93parallel
Strand 3
D
122 127parallel
Strand 4
D
151 155parallel
Strand 5
D
190 193parallel
Strand 6
D
214 216parallel
Strand 7
D
269 272parallel
Strand 8
D
292 295parallel
Strand 9
D
62 64parallel
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