Analysis of interatomic Contacts of Structural Units in PDB entry:
3B07

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3B07 entry

There are 8 chains in PDB entry 3B07 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 17	LYS 300
C	VAL 17	LYS 300
E	VAL 17	LYS 300
G	VAL 17	LYS 300
B	ALA 11	LYS 280
D	ALA 11	LYS 280
F	ALA 11	LYS 280
H	ALA 11	LYS 280

There are 24 helices in PDB entry 3B07. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	203	207	Right-handed 310
Helix 2	2	A	210	214	Right-handed 310
Helix 3	3	A	215	220	Right-handed alpha
Helix 4	4	C	203	207	Right-handed 310
Helix 5	5	C	210	214	Right-handed 310
Helix 6	6	C	215	220	Right-handed alpha
Helix 7	7	E	203	207	Right-handed 310
Helix 8	8	E	210	214	Right-handed 310
Helix 9	9	E	215	220	Right-handed alpha
Helix 10	10	G	203	207	Right-handed 310
Helix 11	11	G	210	214	Right-handed 310
Helix 12	12	G	215	220	Right-handed alpha
Helix 13	13	B	186	191	Right-handed 310
Helix 14	14	B	193	197	Right-handed 310
Helix 15	15	B	198	203	Right-handed alpha
Helix 16	16	D	186	191	Right-handed 310
Helix 17	17	D	193	197	Right-handed 310
Helix 18	18	D	198	203	Right-handed alpha
Helix 19	19	F	186	191	Right-handed 310
Helix 20	20	F	193	197	Right-handed 310
Helix 21	21	F	198	203	Right-handed alpha
Helix 22	22	H	186	191	Right-handed 310
Helix 23	23	H	193	197	Right-handed 310
Helix 24	24	H	198	203	Right-handed alpha

There are 33 sheets in PDB entry 3B07. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	28	first strand
Strand 2	A	33	43	anti-parallel
Strand 3	A	49	61	anti-parallel
Strand 4	A	225	233	anti-parallel
Strand 5	A	95	101	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	28	first strand
Strand 2	A	33	43	anti-parallel
Strand 3	A	49	61	anti-parallel
Strand 4	A	221	222	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	154	first strand
Strand 2	A	162	169	anti-parallel
Strand 3	A	74	88	anti-parallel
Strand 4	A	239	257	anti-parallel
Strand 5	A	262	282	anti-parallel
Strand 6	A	287	299	anti-parallel

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There are 17 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	125	first strand
Strand 2	A	130	148	anti-parallel
Strand 3	B	102	118	anti-parallel
Strand 4	B	122	140	anti-parallel
Strand 5	C	108	125	anti-parallel
Strand 6	C	130	148	anti-parallel
Strand 7	D	102	118	anti-parallel
Strand 8	D	122	140	anti-parallel
Strand 9	E	108	125	anti-parallel
Strand 10	E	130	148	anti-parallel
Strand 11	F	102	118	anti-parallel
Strand 12	F	122	140	anti-parallel
Strand 13	G	108	125	anti-parallel
Strand 14	G	130	148	anti-parallel
Strand 15	H	102	118	anti-parallel
Strand 16	H	122	140	anti-parallel
Strand 17	A	108	125	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	28	first strand
Strand 2	C	33	43	anti-parallel
Strand 3	C	49	61	anti-parallel
Strand 4	C	225	233	anti-parallel
Strand 5	C	95	101	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	28	first strand
Strand 2	C	33	43	anti-parallel
Strand 3	C	49	61	anti-parallel
Strand 4	C	221	222	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	154	first strand
Strand 2	C	162	169	anti-parallel
Strand 3	C	74	88	anti-parallel
Strand 4	C	239	257	anti-parallel
Strand 5	C	262	282	anti-parallel
Strand 6	C	287	299	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	28	first strand
Strand 2	E	33	43	anti-parallel
Strand 3	E	49	61	anti-parallel
Strand 4	E	225	233	anti-parallel
Strand 5	E	95	101	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	28	first strand
Strand 2	E	33	43	anti-parallel
Strand 3	E	49	61	anti-parallel
Strand 4	E	221	222	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	154	first strand
Strand 2	E	162	169	anti-parallel
Strand 3	E	74	88	anti-parallel
Strand 4	E	239	257	anti-parallel
Strand 5	E	262	282	anti-parallel
Strand 6	E	287	299	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	28	first strand
Strand 2	G	33	43	anti-parallel
Strand 3	G	49	61	anti-parallel
Strand 4	G	225	233	anti-parallel
Strand 5	G	95	101	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	28	first strand
Strand 2	G	33	43	anti-parallel
Strand 3	G	49	61	anti-parallel
Strand 4	G	221	222	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	150	154	first strand
Strand 2	G	162	169	anti-parallel
Strand 3	G	74	88	anti-parallel
Strand 4	G	239	257	anti-parallel
Strand 5	G	262	282	anti-parallel
Strand 6	G	287	299	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	22	first strand
Strand 2	B	27	36	anti-parallel
Strand 3	B	44	55	anti-parallel
Strand 4	B	208	215	anti-parallel
Strand 5	B	89	95	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	22	first strand
Strand 2	B	27	36	anti-parallel
Strand 3	B	44	55	anti-parallel
Strand 4	B	204	205	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	70	84	anti-parallel
Strand 3	B	153	160	anti-parallel
Strand 4	B	142	150	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	70	84	anti-parallel
Strand 3	B	222	241	anti-parallel
Strand 4	B	244	266	anti-parallel
Strand 5	B	271	278	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	168	171	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	22	first strand
Strand 2	D	27	37	anti-parallel
Strand 3	D	44	55	anti-parallel
Strand 4	D	208	215	anti-parallel
Strand 5	D	89	95	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	22	first strand
Strand 2	D	27	37	anti-parallel
Strand 3	D	44	55	anti-parallel
Strand 4	D	204	205	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	62	first strand
Strand 2	D	70	84	anti-parallel
Strand 3	D	153	160	anti-parallel
Strand 4	D	142	150	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	62	first strand
Strand 2	D	70	84	anti-parallel
Strand 3	D	222	241	anti-parallel
Strand 4	D	244	266	anti-parallel
Strand 5	D	271	278	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	165	first strand
Strand 2	D	168	171	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	22	first strand
Strand 2	F	27	37	anti-parallel
Strand 3	F	44	55	anti-parallel
Strand 4	F	208	215	anti-parallel
Strand 5	F	89	95	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	22	first strand
Strand 2	F	27	37	anti-parallel
Strand 3	F	44	55	anti-parallel
Strand 4	F	204	205	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	70	84	anti-parallel
Strand 3	F	153	160	anti-parallel
Strand 4	F	142	150	anti-parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	70	84	anti-parallel
Strand 3	F	222	241	anti-parallel
Strand 4	F	244	266	anti-parallel
Strand 5	F	271	278	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	165	first strand
Strand 2	F	168	171	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	22	first strand
Strand 2	H	27	37	anti-parallel
Strand 3	H	44	55	anti-parallel
Strand 4	H	208	215	anti-parallel
Strand 5	H	89	95	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	22	first strand
Strand 2	H	27	37	anti-parallel
Strand 3	H	44	55	anti-parallel
Strand 4	H	204	205	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	62	first strand
Strand 2	H	70	84	anti-parallel
Strand 3	H	153	160	anti-parallel
Strand 4	H	142	150	anti-parallel

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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	62	first strand
Strand 2	H	70	84	anti-parallel
Strand 3	H	222	241	anti-parallel
Strand 4	H	244	266	anti-parallel
Strand 5	H	271	278	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	165	first strand
Strand 2	H	168	171	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3B07

Analysis of interatomic Contacts of Structural Units in PDB entry:
3B07