Analysis of interatomic Contacts of Structural Units in PDB entry:
3B0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B0D entry

There are 4 chains in PDB entry 3B0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
T
 GLU 535SER 631
W
 ARG 2GLY 76
B
 GLU 535ALA 629
C
 ARG 2GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3B0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
T
537 550Right-handed alpha
Helix 2
2
T
554 583Right-handed alpha
Helix 3
3
T
589 600Right-handed alpha
Helix 4
4
T
608 617Right-handed alpha
Helix 5
5
T
618 626Right-handed alpha
Helix 6
11
W
6 18Right-handed alpha
Helix 7
12
W
26 53Right-handed alpha
Helix 8
13
W
59 74Right-handed alpha
Helix 9
6
B
537 550Right-handed alpha
Helix 10
7
B
554 583Right-handed alpha
Helix 11
8
B
589 600Right-handed alpha
Helix 12
9
B
608 617Right-handed alpha
Helix 13
10
B
618 626Right-handed alpha
Helix 14
14
C
6 18Right-handed alpha
Helix 15
15
C
26 53Right-handed alpha
Helix 16
16
C
59 74Right-handed alpha
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There are 2 sheets in PDB entry 3B0D. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
587 588first strand
Strand 2
W
22 23parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
587 588first strand
Strand 2
C
22 23parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il