Analysis of interatomic Contacts of Structural Units in PDB entry:
3B13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B13 entry

There are 4 chains in PDB entry 3B13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1196MET 1622
B
 MET 1LEU 177
C
 SER 1196MET 1622
D
 MET 1LEU 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 3B13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1196 1214Right-handed alpha
Helix 2
2
A
1216 1234Right-handed alpha
Helix 3
3
A
1236 1249Right-handed alpha
Helix 4
4
A
1272 1291Right-handed alpha
Helix 5
5
A
1293 1311Right-handed alpha
Helix 6
6
A
1314 1335Right-handed alpha
Helix 7
7
A
1370 1382Right-handed alpha
Helix 8
8
A
1395 1400Right-handed alpha
Helix 9
9
A
1418 1422Right-handed 310
Helix 10
10
A
1427 1437Right-handed alpha
Helix 11
11
A
1493 1519Right-handed alpha
Helix 12
12
A
1524 1536Right-handed alpha
Helix 13
13
A
1543 1551Right-handed alpha
Helix 14
14
A
1552 1559Right-handed alpha
Helix 15
15
A
1562 1591Right-handed alpha
Helix 16
16
A
1592 1594Right-handed 310
Helix 17
17
A
1595 1618Right-handed alpha
Helix 18
18
B
15 25Right-handed alpha
Helix 19
19
B
61 65Right-handed 310
Helix 20
20
B
67 72Right-handed 310
Helix 21
21
B
86 96Right-handed alpha
Helix 22
22
B
96 105Right-handed alpha
Helix 23
23
B
116 120Right-handed 310
Helix 24
24
B
122 132Right-handed alpha
Helix 25
25
B
138 149Right-handed alpha
Helix 26
26
B
164 177Right-handed alpha
Helix 27
27
C
1196 1214Right-handed alpha
Helix 28
28
C
1216 1234Right-handed alpha
Helix 29
29
C
1236 1249Right-handed alpha
Helix 30
30
C
1272 1291Right-handed alpha
Helix 31
31
C
1293 1311Right-handed alpha
Helix 32
32
C
1314 1335Right-handed alpha
Helix 33
33
C
1370 1380Right-handed alpha
Helix 34
34
C
1395 1400Right-handed alpha
Helix 35
35
C
1418 1422Right-handed 310
Helix 36
36
C
1427 1437Right-handed alpha
Helix 37
37
C
1493 1519Right-handed alpha
Helix 38
38
C
1524 1536Right-handed alpha
Helix 39
39
C
1543 1551Right-handed alpha
Helix 40
40
C
1552 1559Right-handed alpha
Helix 41
41
C
1562 1591Right-handed alpha
Helix 42
42
C
1595 1618Right-handed alpha
Helix 43
43
D
15 25Right-handed alpha
Helix 44
44
D
61 65Right-handed 310
Helix 45
45
D
67 72Right-handed 310
Helix 46
46
D
86 96Right-handed alpha
Helix 47
47
D
96 105Right-handed alpha
Helix 48
48
D
116 120Right-handed 310
Helix 49
49
D
122 132Right-handed alpha
Helix 50
50
D
138 150Right-handed alpha
Helix 51
51
D
164 177Right-handed alpha
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There are 4 sheets in PDB entry 3B13. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1385 1387first strand
Strand 2
A
1404 1413parallel
Strand 3
A
1439 1449anti-parallel
Strand 4
A
1462 1475anti-parallel
Strand 5
A
1481 1492anti-parallel
Strand 6
A
1359 1367anti-parallel
Strand 7
A
1340 1348anti-parallel
Strand 8
A
1404 1413anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 45first strand
Strand 2
B
50 57anti-parallel
Strand 3
B
2 10parallel
Strand 4
B
77 83parallel
Strand 5
B
110 115parallel
Strand 6
B
153 156parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1386 1387first strand
Strand 2
C
1405 1414parallel
Strand 3
C
1439 1449anti-parallel
Strand 4
C
1462 1475anti-parallel
Strand 5
C
1481 1492anti-parallel
Strand 6
C
1359 1364anti-parallel
Strand 7
C
1342 1348anti-parallel
Strand 8
C
1405 1414anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
40 46first strand
Strand 2
D
49 57anti-parallel
Strand 3
D
2 10parallel
Strand 4
D
77 83parallel
Strand 5
D
110 115parallel
Strand 6
D
153 156parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il