Analysis of interatomic Contacts of Structural Units in PDB entry:
3B1Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3B1Q entry

There are 5 chains in PDB entry 3B1Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	PRO 311
B	ALA 2	GLY 313
C	ALA 2	GLY 313
D	ALA 2	LEU 316
E	ALA 2	VAL 94

There are 81 helices in PDB entry 3B1Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	20	24	Right-handed 310
Helix 2	2	A	48	60	Right-handed alpha
Helix 3	3	A	75	86	Right-handed alpha
Helix 4	4	A	119	128	Right-handed 310
Helix 5	5	A	129	133	Right-handed 310
Helix 6	6	A	145	160	Right-handed alpha
Helix 7	7	A	167	174	Right-handed 310
Helix 8	8	A	175	186	Right-handed alpha
Helix 9	9	A	193	204	Right-handed alpha
Helix 10	10	A	206	212	Right-handed alpha
Helix 11	11	A	222	224	Right-handed 310
Helix 12	12	A	250	265	Right-handed alpha
Helix 13	13	A	268	285	Right-handed alpha
Helix 14	14	A	295	308	Right-handed alpha
Helix 15	15	B	48	61	Right-handed alpha
Helix 16	16	B	75	86	Right-handed alpha
Helix 17	17	B	119	128	Right-handed 310
Helix 18	18	B	129	133	Right-handed 310
Helix 19	19	B	145	160	Right-handed alpha
Helix 20	20	B	167	174	Right-handed 310
Helix 21	21	B	175	186	Right-handed alpha
Helix 22	22	B	193	204	Right-handed alpha
Helix 23	23	B	206	212	Right-handed alpha
Helix 24	24	B	222	224	Right-handed 310
Helix 25	25	B	250	265	Right-handed alpha
Helix 26	26	B	268	285	Right-handed alpha
Helix 27	27	B	295	308	Right-handed alpha
Helix 28	28	C	20	25	Right-handed alpha
Helix 29	29	C	48	61	Right-handed alpha
Helix 30	30	C	75	86	Right-handed alpha
Helix 31	31	C	119	128	Right-handed 310
Helix 32	32	C	129	133	Right-handed 310
Helix 33	33	C	145	160	Right-handed alpha
Helix 34	34	C	167	174	Right-handed 310
Helix 35	35	C	175	186	Right-handed alpha
Helix 36	36	C	193	204	Right-handed alpha
Helix 37	37	C	206	212	Right-handed alpha
Helix 38	38	C	222	224	Right-handed 310
Helix 39	39	C	250	265	Right-handed alpha
Helix 40	40	C	268	285	Right-handed alpha
Helix 41	41	C	295	308	Right-handed alpha
Helix 42	42	D	48	61	Right-handed alpha
Helix 43	43	D	75	86	Right-handed alpha
Helix 44	44	D	119	128	Right-handed 310
Helix 45	45	D	129	133	Right-handed 310
Helix 46	46	D	145	160	Right-handed alpha
Helix 47	47	D	167	174	Right-handed 310
Helix 48	48	D	175	186	Right-handed alpha
Helix 49	49	D	193	204	Right-handed alpha
Helix 50	50	D	206	212	Right-handed alpha
Helix 51	51	D	222	224	Right-handed 310
Helix 52	52	D	250	265	Right-handed alpha
Helix 53	53	D	268	285	Right-handed alpha
Helix 54	54	D	295	308	Right-handed alpha
Helix 55	55	E	20	24	Right-handed 310
Helix 56	56	E	48	61	Right-handed alpha
Helix 57	57	E	75	86	Right-handed alpha
Helix 58	58	E	119	128	Right-handed 310
Helix 59	59	E	129	133	Right-handed 310
Helix 60	60	E	145	160	Right-handed alpha
Helix 61	61	E	167	174	Right-handed 310
Helix 62	62	E	175	186	Right-handed alpha
Helix 63	63	E	193	204	Right-handed alpha
Helix 64	64	E	206	212	Right-handed alpha
Helix 65	65	E	222	224	Right-handed 310
Helix 66	66	E	250	265	Right-handed alpha
Helix 67	67	E	268	285	Right-handed alpha
Helix 68	68	E	295	308	Right-handed alpha
Helix 69	69	F	48	61	Right-handed alpha
Helix 70	70	F	75	86	Right-handed alpha
Helix 71	71	F	119	128	Right-handed 310
Helix 72	72	F	129	133	Right-handed 310
Helix 73	73	F	145	160	Right-handed alpha
Helix 74	74	F	167	174	Right-handed 310
Helix 75	75	F	175	186	Right-handed alpha
Helix 76	76	F	193	204	Right-handed alpha
Helix 77	77	F	206	212	Right-handed alpha
Helix 78	78	F	222	224	Right-handed 310
Helix 79	79	F	250	265	Right-handed alpha
Helix 80	80	F	268	285	Right-handed alpha
Helix 81	81	F	295	308	Right-handed alpha

There are 12 sheets in PDB entry 3B1Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	95	first strand
Strand 2	A	64	71	parallel
Strand 3	A	3	6	parallel
Strand 4	A	138	141	parallel
Strand 5	A	163	165	parallel
Strand 6	A	188	192	parallel
Strand 7	A	216	220	parallel
Strand 8	A	226	230	anti-parallel
Strand 9	A	234	237	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	47	first strand
Strand 2	A	10	17	anti-parallel
Strand 3	A	101	108	parallel
Strand 4	A	113	118	anti-parallel
Strand 5	F	34	38	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	F	113	118	parallel
Strand 3	F	101	107	anti-parallel
Strand 4	F	10	16	parallel
Strand 5	F	41	47	anti-parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	95	first strand
Strand 2	B	64	71	parallel
Strand 3	B	3	6	parallel
Strand 4	B	138	141	parallel
Strand 5	B	163	165	parallel
Strand 6	B	188	192	parallel
Strand 7	B	216	220	parallel
Strand 8	B	226	230	anti-parallel
Strand 9	B	233	237	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	47	first strand
Strand 2	B	10	17	anti-parallel
Strand 3	B	101	108	parallel
Strand 4	B	113	118	anti-parallel
Strand 5	D	35	38	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	D	113	118	parallel
Strand 3	D	101	107	anti-parallel
Strand 4	D	10	16	parallel
Strand 5	D	41	47	anti-parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	95	first strand
Strand 2	C	64	71	parallel
Strand 3	C	3	6	parallel
Strand 4	C	138	141	parallel
Strand 5	C	163	165	parallel
Strand 6	C	188	192	parallel
Strand 7	C	216	220	parallel
Strand 8	C	226	230	anti-parallel
Strand 9	C	233	237	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	47	first strand
Strand 2	C	10	16	anti-parallel
Strand 3	C	101	107	parallel
Strand 4	C	113	118	anti-parallel
Strand 5	E	34	38	parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	E	113	118	parallel
Strand 3	E	101	107	anti-parallel
Strand 4	E	10	16	parallel
Strand 5	E	42	47	anti-parallel

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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	95	first strand
Strand 2	D	64	71	parallel
Strand 3	D	3	6	parallel
Strand 4	D	138	141	parallel
Strand 5	D	163	165	parallel
Strand 6	D	188	192	parallel
Strand 7	D	216	220	parallel
Strand 8	D	226	230	anti-parallel
Strand 9	D	233	237	anti-parallel

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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	95	first strand
Strand 2	E	64	71	parallel
Strand 3	E	3	6	parallel
Strand 4	E	138	141	parallel
Strand 5	E	163	165	parallel
Strand 6	E	188	192	parallel
Strand 7	E	216	220	parallel
Strand 8	E	226	230	anti-parallel
Strand 9	E	233	237	anti-parallel

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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	95	first strand
Strand 2	F	64	71	parallel
Strand 3	F	3	6	parallel
Strand 4	F	138	141	parallel
Strand 5	F	163	165	parallel
Strand 6	F	188	192	parallel
Strand 7	F	216	220	parallel
Strand 8	F	226	230	anti-parallel
Strand 9	F	233	237	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3B1Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
3B1Q