Analysis of interatomic Contacts of Structural Units in PDB entry:
3B2Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3B2Q entry

There are 2 chains in PDB entry 3B2Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 11ARG 457
B
 ALA 12LYS 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 3B2Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 85Right-handed 310
Helix 2
2
A
131 136Right-handed alpha
Helix 3
3
A
155 167Right-handed alpha
Helix 4
4
A
186 201Right-handed alpha
Helix 5
5
A
202 204Right-handed 310
Helix 6
6
A
216 238Right-handed alpha
Helix 7
7
A
248 257Right-handed alpha
Helix 8
8
A
258 263Right-handed 310
Helix 9
9
A
273 279Right-handed 310
Helix 10
10
A
280 285Right-handed alpha
Helix 11
11
A
317 321Right-handed 310
Helix 12
12
A
329 335Right-handed alpha
Helix 13
13
A
350 354Right-handed 310
Helix 14
14
A
363 389Right-handed alpha
Helix 15
15
A
390 393Right-handed 310
Helix 16
16
A
394 411Right-handed alpha
Helix 17
17
A
421 434Right-handed alpha
Helix 18
18
A
435 436Right-handed 310
Helix 19
19
A
437 441Right-handed 310
Helix 20
20
A
445 453Right-handed alpha
Helix 21
21
B
81 85Right-handed 310
Helix 22
22
B
131 136Right-handed alpha
Helix 23
23
B
155 167Right-handed alpha
Helix 24
24
B
186 201Right-handed alpha
Helix 25
25
B
202 204Right-handed 310
Helix 26
26
B
216 238Right-handed alpha
Helix 27
27
B
248 258Right-handed alpha
Helix 28
28
B
275 285Right-handed alpha
Helix 29
29
B
317 321Right-handed 310
Helix 30
30
B
329 335Right-handed alpha
Helix 31
31
B
350 355Right-handed 310
Helix 32
32
B
363 389Right-handed alpha
Helix 33
33
B
390 393Right-handed 310
Helix 34
34
B
394 411Right-handed alpha
Helix 35
35
B
421 434Right-handed alpha
Helix 36
36
B
435 436Right-handed 310
Helix 37
37
B
437 441Right-handed 310
Helix 38
38
B
445 453Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3B2Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 19first strand
Strand 2
A
51 56anti-parallel
Strand 3
A
39 47anti-parallel
Strand 4
A
29 33anti-parallel
Strand 5
A
72 74parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
106 109anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
206 212parallel
Strand 3
A
175 185parallel
Strand 4
A
240 247parallel
Strand 5
A
296 305parallel
Strand 6
A
288 289anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
206 212parallel
Strand 3
A
175 185parallel
Strand 4
A
240 247parallel
Strand 5
A
296 305parallel
Strand 6
A
148 151parallel
Strand 7
A
324 327parallel
Strand 8
A
347 348anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
51 56anti-parallel
Strand 3
B
39 47anti-parallel
Strand 4
B
29 33anti-parallel
Strand 5
B
72 74parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 80first strand
Strand 2
B
106 109anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
206 212parallel
Strand 3
B
175 185parallel
Strand 4
B
240 247parallel
Strand 5
B
296 305parallel
Strand 6
B
288 289anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
206 212parallel
Strand 3
B
175 185parallel
Strand 4
B
240 247parallel
Strand 5
B
296 305parallel
Strand 6
B
148 151parallel
Strand 7
B
324 327parallel
Strand 8
B
347 348anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il